Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0396 ATGCTCTCCGTTCCGCAACCCTCGTGCATCCCCAAAGCCCTAAAACCCTCCATTCCCCTTCCGTTTCCGGCCATGAAGGACCGCCGCACGCTGTCCCCCTACAGCTCCATTTACATTCCGCCGCACCACCGCCTGCGCTCCGCTGCCAATTTCAACAACTCTCCCTCTCCGGTTCGCGCCAAACTCCACGAAAACCCTACGCCCGTCGTTACTACTACTCTGCAACCACCGTTAACGGAACAAGTTCCCGACAAGGCGCGTCCGCACTTCGTTTCTGCTTATGACGACGCCGTTTCCGAGGAAGGCTCCGATCGTGAATTTGAACCTCCCTCACTACCGAATGCTTCCCCCAATGATAACACTGATGAGTGGAAACGGAACTTTACTATGCTCTTAAATGACAAGAGTAAGCATGAGTTGATCTCGAGGGAGAAAAAGGATAGGCGTGATTTTGAGCGAATAGCAGTTCTGGCAAGCAGAATGGGCTTGTATAGCCATATGTATGCTAAGGTTGTTGTCTTCAGCAAGGTCCCACTTCCAAATTACAGATATGATTTGGACGATCGGCGGCCTCAGAGGGAGGTGAACTTGTCTATCACCACGTTTACCCGAGTTAATGGATATTTTGAGGAATATCTTAGCCAAAAGCCCAAGGTGAACAAAAGCTTTTCAGATTTATCATCTGCAAGATCATGCAGTAATGGCAGTATTGGTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACTAGCATCCAGTAAGGCTGTTATGGAGAAAATTCTGTGGCAGAGAAGCTTACAAATGCGCGATCAGCAGCAAGCTTGGCAGGAATCTCCTGAAGGAAGAAGAATGCTAGAATTTCGTAGAAGTCTCCCTgcttataaaaagaaagaagcaaTATTATCAGTCATATCAAGGAATCAGGTAGTTATCATTTCAGGCAAAACAGGTTGTGGCAAGACAACACAAATTCcacaatttattttagaatcaGAGATAGAATCAGTTTGTGGAGCTGCTTGTAATGTTATATGCACACAGCCAAGACGCATTTCAGCCATGTCTGTTTCTGAAAGGGTTGCCTCTGAGAGAGGGGAGAAATTGGGCGAATCTGTTGGATATAAAGTTCGACTTGAGGGTATGAAAGGGAGGGATACCCATCTTCTCTTTTGCACTACAGGCATCTTATTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGTGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGAACTGAAACTGATTTTGATGAGTGCTACCCTAGATGCAGAGCTCTTTTCTTCGTACTTTAATGGGGCTCCAATTACGTATATTCCGGGCTTCACATACCCCGTTAGAACTCATTTTTTGGAGAACATTCTTGAAATGACGGGCTACAGATTGACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAAGCCCCAAGAAAGAGGAAAAGCCAAATTGCTTCCGCTGTAGAGGATGCAATTAGAGCTGCTGATTTCAAAGATTACAGCCCACAGACACAGGAGTCATTGTCATGTTGGAATCCTGACTGTATTGGTTTTAGTCtcatagaatatattttatgcaatatatgTGAGAATGAAAGGCCTGGTGCTGTTTTGGTTTTCATGACTGGTTGGGATGATATAAGCTCTCTGAAAGAGAACCTCCTGACACATACTGTCTTGGGAGATCCAAACCGTGTTTTGTTGCTTACATGTCATGGCTCAATGGCTAGTTCAGAGCAGAGAAGAGGAAGAGCTGGTCGGGTTCAACCAGGAGAGTGTTACCATATCTATCCTAGATGTGTGTATGATGCTTTTGCAGATTATCAGTTGCCAGAAATTTTGAGAACACCTTTGCAATCTCTGTGTTTACAAATCAAAAGTCTAAGGCTTGGAAGTATATCTGAGTTCTTGTCTAGGGCTTTGCAGTCTCCTGAGATACTTGCGGTACAAAATgcaattgaatatttaaaaataatcggGGCTTTGGATGAGAATGAGAATCTTACTATTCTAGGGCGCTATCTGACAATGCTTCCAATGGAACCCAAACTTGCCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTTGTTGCTGGGCTTAGTGTGAGAGATCCTTTTCTAACACCATTGGATAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATTCTGTGGTGCATACAGTGACCACCTTGCACTTGTAAGAGCATATGAAGGTTGGAAAAATGCTGAAATGGACCTGGGTGGATATGAGTACTGCtggaaaaattttctttcctcaCAATCCATGAAAGTTATTGATGCTCTTCGGAGGGAGTTCATATGCCTGCTCAAGGATATCGGATTAGTTGATAGCAATACAGCCAGCTGCAATGCATGGAGCTCTGATGTAAATCTTATCCGAGCGGTTATTTGCTATGGTTTATATCCTGGAATTTGTTCTGTTGTGCATAATGAGAAATCATTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTCGAACTCAGTGAATGCCCGGGAAACTAAAATTCCATATCCATGGCTAGTTTTTAATGAGAAGATAAAAGTGAACTCAGTTTTTCTCCGTGACTCAACAGCTGTGTCTGATTCAGTGGTGCTTCTGTTTGGTGGAAGCTTATTTAAAGGAGATGCTgataatcacttaaaaatgtTAGGAGGATATCTGGAGTTTTTCATGGAGCCCACTGTTGCTGAAATGTACCAGAGTATAAGGGGGGAACTTGATGACTTCATTCAGAGTAAAGTaggttcaatttaa 2868 0.4146 MLSVPQPSCIPKALKPSIPLPFPAMKDRRTLSPYSSIYIPPHHRLRSAANFNNSPSPVRAKLHENPTPVVTTTLQPPLTEQVPDKARPHFVSAYDDAVSEEGSDREFEPPSLPNASPNDNTDEWKRNFTMLLNDKSKHELISREKKDRRDFERIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVNLSITTFTRVNGYFEEYLSQKPKVNKSFSDLSSARSCSNGSIGTDEGLFEQPEPLASSKAVMEKILWQRSLQMRDQQQAWQESPEGRRMLEFRRSLPAYKKKEAILSVISRNQVVIISGKTGCGKTTQIPQFILESEIESVCGAACNVICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRKLKGVTHVIVDEIHERGMNEELKLILMSATLDAELFSSYFNGAPITYIPGFTYPVRTHFLENILEMTGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDAIRAADFKDYSPQTQESLSCWNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKENLLTHTVLGDPNRVLLLTCHGSMASSEQRRGRAGRVQPGECYHIYPRCVYDAFADYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDENENLTILGRYLTMLPMEPKLAKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFCGAYSDHLALVRAYEGWKNAEMDLGGYEYCWKNFLSSQSMKVIDALRREFICLLKDIGLVDSNTASCNAWSSDVNLIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSLFKGDADNHLKMLGGYLEFFMEPTVAEMYQSIRGELDDFIQSKVGSI 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0396 955 MobiDBLite consensus disorder prediction 48 79 - -
Ssu7g0396 955 Gene3D - 651 753 - -
Ssu7g0396 955 CDD DEXHc_RHA-like 307 452 - -
Ssu7g0396 955 Gene3D - 585 627 IPR027417 -
Ssu7g0396 955 PANTHER ATP-DEPENDENT RNA HELICASE 80 601 - -
Ssu7g0396 955 Pfam DEAD/DEAH box helicase 299 420 IPR011545 GO:0003676|GO:0005524
Ssu7g0396 955 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 599 952 - -
Ssu7g0396 955 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 80 601 - -
Ssu7g0396 955 SMART ha2_5 671 761 IPR007502 GO:0004386
Ssu7g0396 955 Gene3D - 250 454 IPR027417 -
Ssu7g0396 955 MobiDBLite consensus disorder prediction 48 122 - -
Ssu7g0396 955 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 301 453 IPR014001 -
Ssu7g0396 955 Pfam Helicase associated domain (HA2) 672 745 IPR007502 GO:0004386
Ssu7g0396 955 SMART ultradead3 288 467 IPR014001 -
Ssu7g0396 955 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 827 908 IPR011709 -
Ssu7g0396 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 797 IPR027417 -
Ssu7g0396 955 PANTHER ATP-DEPENDENT RNA HELICASE 599 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0396 Ssu-Chr7 7005623 7023271 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0396 7 7005623 7023271 Ssu7g0396 7 7005623 7023271 ECH