Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0385 ATGCATAATAAGGACGTTTGCTCCTCCCCCTCCTCAAACGGCGGATTCGGCGCCGCCGCCGCAGGTCAAATGCCGTCAACCGGCGGCGTCTATACTTCGCTCTACTCCGCTCTGTCGAACGAGAACCTTCCGTCGCTCTCCGGAAACTGCAGCAACGGCGGCGGCGTGTCGCTGTACCCGTACTCCGAGTCAACTCAGTACGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCACAGCATGTGCCTGAGTCGGCTCGTGGAAACTTCCAAAGAGGTGGAGGCTCTGCAGCAAGAGAACGGCCAGCTCCGCGCCGCGAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAACCAGTTCGGCGGCGGCTCCTCCGGCCAGCCGCAAGCAACGCTGTTCGATATCGTGCATGGCTTCCGCGGCCTCCACGTCGGGGAGGGGAAAGAGAACTGCGCTGATTGgaataacaacaataatcataatcataacaataatatcaataataatagcaataaggAGCTGCAGGAAAATTCGGACGAGAGTCCAACGAGCGTGATTGAGAATAACGTCGTGGAAGTGGAGAGGTTCTCGCTCCCTAAGAGCATATCCGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCGGCTCTTGCCACCAATAATAATGCCTCTCGCAACAAAGGTGCCACTCGCCCACGCACCTCCTCCGCTCCACCTGAAGCCGTTCAGAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAAATGATAGTGTATAATCAAGGGATGTTCAAGACTGAGCTGTGTAATAAGTGGCAGGAAACTGGCACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCGCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTATGCCCTTATGGCCATAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1086 0.5313 MHNKDVCSSPSSNGGFGAAAAGQMPSTGGVYTSLYSALSNENLPSLSGNCSNGGGVSLYPYSESTQYDSCVIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAANKELQKQLHLVIQASLENQFGGGSSGQPQATLFDIVHGFRGLHVGEGKENCADWNNNNNHNHNNNINNNSNKELQENSDESPTSVIENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNASRNKGATRPRTSSAPPEAVQKVYVRGGQKEEEPLEMIVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0385 361 MobiDBLite consensus disorder prediction 229 250 - -
Ssu7g0385 361 Coils Coil 89 119 - -
Ssu7g0385 361 SUPERFAMILY CCCH zinc finger 273 308 IPR036855 GO:0046872
Ssu7g0385 361 MobiDBLite consensus disorder prediction 162 192 - -
Ssu7g0385 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872
Ssu7g0385 361 MobiDBLite consensus disorder prediction 229 247 - -
Ssu7g0385 361 PANTHER CCCH ZINC FINGER/TIS11-RELATED 61 351 IPR045877 GO:0003729
Ssu7g0385 361 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Ssu7g0385 361 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 61 351 - -
Ssu7g0385 361 Gene3D - 271 309 - -
Ssu7g0385 361 Gene3D - 310 346 - -
Ssu7g0385 361 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Ssu7g0385 361 SUPERFAMILY CCCH zinc finger 310 344 IPR036855 GO:0046872
Ssu7g0385 361 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Ssu7g0385 361 SMART c3hfinal6 276 303 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0385 71 356 C3H Transcription Factor Family AT1G68200 51.903 9.05e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu7g0385 zf-CCCH 2.9e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0385 7 6815276 6817563 Ssu7g0385 7 6815276 6817563 ECH