Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0376 ATGGCGTCGCGGGGTTTGTTTTCCTTCGGAAATTTCTGGCCATCGTTTCAGGGAGGGGTGAGGCAGCAGGTTGATCCTGCGGCTCATACTATCAAGTCCCATGGAGCCGCACTTGCAAGAAATCACGTTCGTGATTGGCTTATATTGCTGTTTCTCATAGCAATAGAGGTTGTCCTTTTTGTCATTCATCCATTTTACCGCTTTGTGGGAAGGGACATGATGGAGGACCTTAAATATCCCATGAAAGACAACACGGTGCCCGTATGGGCTGTTCctTTATACGCGGTTCTGTTGCCAATGGccgttttccttctcttctatATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTATTCTAGGTTTGCTATTCGCTGCTCTGATCACTGGGGTCTTGACCGATGCAATAAAAAATGCAGTTGGCCGGCCCCGGCCAGACTTCTTTTGGCGTTGCTTCCCCGATGGGGTAGAGAATTATGATAAATGGGGAGGTGTGGTATGTCATGGCAAGGATAGCGATATAAAAGAAGGACACAAGAGTTTCCCAAGCGGCCATACATCATGGTCCTTCGCAGGTCTaggttttctctctctctacctATCGGGGAAGATTAAAGCTTTTGATCGCAAAGGGCACGTGGCAAAATTATGCATTGTGTATCTTCCTCTACTTGTTGCTTGCCTAGTTGGAATCTCTCGAGTCGATGACTATTGGCACCATTGGCAAGATGTGTTTACCGGAGGCATTCTAGGGCTTGTTGTTGCAACGTTTTGCTATATGCAGTTTTTCCCTGCTCCCTATAGTGATGACGGATGGGGTCCATATGCATATTTCCGAGCAATGGAGGAATCACGAGCCAATGCAAACATTAATCGGGACTCACCCGTTGTGCAGGCCATTCAGGATCGGGTTATGAACCAAGAACCAAGGAGAAATGGTGATACATTCACCCCCTACCCTTATCGTAGCCCAACCTTGGAAGCCATGGAAATGGGACAGAACAAAAAAATGCCAGAAATTCAGTTGGGTATGCATACTATCAGATCACATGGAACTACAGTGGCAAGGGTACATATGCATGACTGGttgattcttttgtttcttgtgatcCTCGATGCTGTCTTGAATATAATAGAGCCATTTCACCGTTTTGTTGGAGAGGGGATGATGACAGACCTTAGATACCCATTGAAGGATAATACTATTCCCTTTTGGGCTGTTCCGATAATAGCAATATTGTTACCACTGGCTGTTATTCTCGTCTACTATTTCTTTCGAAAGGATGTTTATGACTTCCACCATGCTATATTGGGCCTTCTATTTTCTGTACTCATTACTGCGGTGATAACTGATGCTATCAAGGATGGTGTTGGACGGCCAAGGCCAGATTTCTTTTGGCGTTGTTTCCCTGATGGAAAAGGGGTGTTTGATCAAGTAACAAGTAATGTTAGGTGTACTGGAGATAAGGGTGTTATTAAGGAAGGGCACAAAAGTTTCCCCAGTGGACATACCTCTTGGTCCTTTGCTGGTCTTGTTTATCTTGCTTGGTATCTATCTGGAAAAATTAGAGTATTTGACCGTAGAGGCCATGTTGCAAAGCTCTGTCTTGTTTTCTTACCAATCCTCGTGGCAGCTATGATTGCTGTCTCTCGTGTTGATGATTATTGGCATCATTGGCAAGATGTGTTTGCTGGAGGTCTTATAGGGACGACAATTGCTTCCTTTTGTTACTTACAATTCTTTCCACCTCCATATGACATAGATGGTTGGGGACCTCATGCATATTTCCAGATGTTGGCTGAATCTCGTAATGGTGCTCAGCCCTCTAACGTCAATAATGAGAGTCATCATGTGCAATCTGCTGAGCTTCAGGCTGTATCTTTGTATATCCCACCTCAACAGGATGCAGATACACGAGGCAATAGCTGGGACTCAAGCCCCATGTTAGGTGGATCACAAAATGTAAGAACACACTGA 1980 0.4364 MASRGLFSFGNFWPSFQGGVRQQVDPAAHTIKSHGAALARNHVRDWLILLFLIAIEVVLFVIHPFYRFVGRDMMEDLKYPMKDNTVPVWAVPLYAVLLPMAVFLLFYMRRRDVYDLHHSILGLLFAALITGVLTDAIKNAVGRPRPDFFWRCFPDGVENYDKWGGVVCHGKDSDIKEGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDRKGHVAKLCIVYLPLLVACLVGISRVDDYWHHWQDVFTGGILGLVVATFCYMQFFPAPYSDDGWGPYAYFRAMEESRANANINRDSPVVQAIQDRVMNQEPRRNGDTFTPYPYRSPTLEAMEMGQNKKMPEIQLGMHTIRSHGTTVARVHMHDWLILLFLVILDAVLNIIEPFHRFVGEGMMTDLRYPLKDNTIPFWAVPIIAILLPLAVILVYYFFRKDVYDFHHAILGLLFSVLITAVITDAIKDGVGRPRPDFFWRCFPDGKGVFDQVTSNVRCTGDKGVIKEGHKSFPSGHTSWSFAGLVYLAWYLSGKIRVFDRRGHVAKLCLVFLPILVAAMIAVSRVDDYWHHWQDVFAGGLIGTTIASFCYLQFFPPPYDIDGWGPHAYFQMLAESRNGAQPSNVNNESHHVQSAELQAVSLYIPPQQDADTRGNSWDSSPMLGGSQNVRTH 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0376 659 PANTHER LIPID PHOSPHATE PHOSPHATASE 1 17 331 - -
Ssu7g0376 659 PANTHER LIPID PHOSPHATE PHOSPHATASE 1 334 628 - -
Ssu7g0376 659 MobiDBLite consensus disorder prediction 635 659 - -
Ssu7g0376 659 CDD PAP2_containing_1_like 77 263 - -
Ssu7g0376 659 Pfam PAP2 superfamily 121 264 IPR000326 -
Ssu7g0376 659 Pfam PAP2 superfamily 437 582 IPR000326 -
Ssu7g0376 659 PANTHER LIPID PHOSPHATE PHOSPHATASE 17 331 IPR043216 GO:0006644
Ssu7g0376 659 PANTHER LIPID PHOSPHATE PHOSPHATASE 334 628 IPR043216 GO:0006644
Ssu7g0376 659 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 42 267 IPR036938 -
Ssu7g0376 659 SMART acid_phosph_2 120 260 IPR000326 -
Ssu7g0376 659 SMART acid_phosph_2 435 578 IPR000326 -
Ssu7g0376 659 CDD PAP2_containing_1_like 392 581 - -
Ssu7g0376 659 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 41 271 - -
Ssu7g0376 659 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 357 587 - -
Ssu7g0376 659 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 358 586 IPR036938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0376 Ssu-Chr7 6712165 6738280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0376 338 627 Lipid Metabolism Gene Families AT1G15080 76.897 3.88e-157 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0376 7 6712165 6738280 Ssu7g0376 7 6712165 6738280 ECH
Ssu7g0376 7 6712165 6738280 Ssu3g0100 3 1889651 1893676 ECH