Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0374 ATGGAGGCCCAACCTCCGACCCCCTCGACCGTGCCGCCGCCTCCGCCGCCGCACCTGAACTACCCCGACTCGGTGGAATCCTCGCCGCGCTCCCGGAACACGGACTCCTGGGACGAGCCGTTCGCGCCGGCGTCGACGAAGCTCCGACTGATGTGCAGCTACGGCGGGCACATCGTCCCGCGCCCCCACGACAAGTCGCTGTGCTACGTCGGCGGCGACACGCGCATCATCGTGTCGGAACGCGCCACCTCGCTGGCGGACCTCTCCACGCGCCTCTCGAAGACGTTCCTGAACGGACGCCCCTTCACGCTCAAGTACCAGCTCCCCAACGAGGACCTCGACTCCCTCATCTCCGTAACCACCGACGAGGACCTCGACAACATGATCGACGAGTACGACCGcaccgccgccgccgccgccacctCCGCCGTCAAACCCTCCCGCATCCGCCTCTTCCTGTTCCCCACCAAGCCCGATTCCACCCACTCCATCCCTCCCCAAATCCTTGACACCTCGGCGAAATCGGACGATTGGTTCCTAAACGCGTTGAACGGCGCTGGATTGCTTAACCGCGGCTTTTCTGATTCTGCTTCTGTTAATTGCCTTCTCGGTCTCGACGACGAGGTTGTCGGGAACAACCTCGAACCCGGTTCGAGGGATGTCGGGGACGGCGGCGCTGGTGGCGGCGCTGGCGCTGGCGGTGCTGGTGGTGGATCTTTCAACGGGAAGAGTAATTTGAAGCAGGATGTTCACTCTGTTCCTGATTCGCCGATGCTGGAGACGACGTCGTCGTTTGGGTCCACCTCGTCGTCGCCGTCGCTGGCCAATTTGCCGCCGATTAGGGTTCATGTCGTGGAGGATCAGAAGGTGATGGGGATTGAGGAGCAGTTCGCGCAGATGGGGGTTGGTGTGGGGCAGAAGCAGGATGAGGGTTTTGTTTTGCTGTCttcgccgccgccgccgccggtGCCGGCGACGCTCGCCCCCATGGGGGTGCCGATTGGGCCGGCGGCGGTCGTCTCCGGGGAATATCACAACCGGGTTGTCTCCGATGATGAGAGATCCGATCATGGGGTTCCTGTTGGGTATAGAAAACCACCCACTCCTCAGCCACAGGTTCAGACACAGACACAAGCACAGACACAGTCACAAACACAAACACTTGCTCCTCAGTTTCAACAGAAGTCAACTGGTGGCGGCGGCGGCGTTGTTGATTTGCCTTCTCCTGATTCAGTTTCAAGTGATAGTAGTCTCGCAAATGCAATTTCGCGTCCGAAACCTGCTGTTTATCAGGACCAAGTTCAGATTCAATCTGGGACTACAAGGGTTCCTAGTCCGAAGCTTAATGTGTCTGATCCACACGGTCGGATTCAGATGCAGCAACATGTACAGGACCCTGGATATTTGTTGCAACAGCAGTTTgaacagcagcagcagcagccgCCACAGCATCAACAGCAGCAACAGTTTATACCTGGCACACACTTCATTCACCATAACCCTGCAATTTCTGCATATTACCCTGTATATCCTTCCCAGCAACATCCCCAGCATCCCCAGGTTTACTATGTGCCTGCGAGACAGACCCAGGCTTACAACCTGCCTTTGCAGCAGGCTAATATGGGTGAGTCTGCGGCAAACATGGCTTCTAGCCGGCCCCAAACTCCGCCGAATCCTGCTACATTGGTTCCACAGCCTTCTGCTTACAACCCCATTAGAAATGCTCCCATGCCTAAAACTGAAATGAGTGCTTACAGAGCTGCAACTGGAGGCACCCCTCAACTAGTTCAAGTTCCTACAAGCCAGCATCAGCAACAGTATGTCACTTACTCGCAGATGCACCATCCATCTCAGTCCATGGCCCCCAATTCTGTTGCCCCTACCAATTATGCTTTTGATTATGCGGATCCTGCTCACGCTCAAATATACTACTCGCAGCCTCTGGCACCCACAATGCCTTCACAGTACCAGACTATGACTGCTGCTGCTGTGATGATGCAGGAAGGTTCGGCTCAGCATCCCTCAGACAGCTTGAAGCAGCAGATAAGAACCTCACAGCCATTATAA 2067 0.5443 MEAQPPTPSTVPPPPPPHLNYPDSVESSPRSRNTDSWDEPFAPASTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVSERATSLADLSTRLSKTFLNGRPFTLKYQLPNEDLDSLISVTTDEDLDNMIDEYDRTAAAAATSAVKPSRIRLFLFPTKPDSTHSIPPQILDTSAKSDDWFLNALNGAGLLNRGFSDSASVNCLLGLDDEVVGNNLEPGSRDVGDGGAGGGAGAGGAGGGSFNGKSNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVMGIEEQFAQMGVGVGQKQDEGFVLLSSPPPPPVPATLAPMGVPIGPAAVVSGEYHNRVVSDDERSDHGVPVGYRKPPTPQPQVQTQTQAQTQSQTQTLAPQFQQKSTGGGGGVVDLPSPDSVSSDSSLANAISRPKPAVYQDQVQIQSGTTRVPSPKLNVSDPHGRIQMQQHVQDPGYLLQQQFEQQQQQPPQHQQQQQFIPGTHFIHHNPAISAYYPVYPSQQHPQHPQVYYVPARQTQAYNLPLQQANMGESAANMASSRPQTPPNPATLVPQPSAYNPIRNAPMPKTEMSAYRAATGGTPQLVQVPTSQHQQQYVTYSQMHHPSQSMAPNSVAPTNYAFDYADPAHAQIYYSQPLAPTMPSQYQTMTAAAVMMQEGSAQHPSDSLKQQIRTSQPL 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0374 688 MobiDBLite consensus disorder prediction 1 40 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 24 40 - -
Ssu7g0374 688 ProSiteProfiles PB1 domain profile. 47 156 IPR000270 GO:0005515
Ssu7g0374 688 SUPERFAMILY CAD & PB1 domains 63 164 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 666 688 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 543 565 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 368 398 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 241 276 - -
Ssu7g0374 688 SMART PB1_new 62 156 IPR000270 GO:0005515
Ssu7g0374 688 Pfam PB1 domain 63 155 IPR000270 GO:0005515
Ssu7g0374 688 Gene3D - 67 154 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 430 447 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 214 276 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 349 449 - -
Ssu7g0374 688 CDD PB1_UP2 51 154 - -
Ssu7g0374 688 MobiDBLite consensus disorder prediction 1 22 - -
Ssu7g0374 688 PANTHER EXPRESSED PROTEIN 9 679 - -
Ssu7g0374 688 PANTHER OS05G0427100 PROTEIN-RELATED 9 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0374 Ssu-Chr7 6676353 6678656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0374 24 160 MAP Kinase Kinase Kinase AT1G04700 42.754 7.53e-23 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0374 7 6676353 6678656 Ssu7g0374 7 6676353 6678656 ECH