Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0373 ATGCGTAGCGGTGGCGGTGAAGTTGAAGTGAAAAGGGTGTTTATCGGAGCGGGATGCAACAGAATAGTGAACAACGTTTCATGGGGTGCTTCCGGTTTGGTCTCTTTTGGAGCTCACAACGCCGTTGCTATTTTCTGCCCCAAGAGTGCTCAAATTTTGACAACTCTTCCGGGTCACAAGGCAGTTGTGAATTGCACCCACTGGCTCCCAACCGCCAAGTTTCTATTTAAAGCAAAACAATTGGAGCAGCATTATTTGCTATCTGGAGATGCAGATGGTGCTATTATTTTGTGGGAACTGTCCCTTGCCCATGGGAAGTGGAGGCAAGTGTTACAACTGCCACAATCACACAAGAAAGGTGTTACTTGCATTAGTGGAATTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGCACTGTTTGTGTATGGGAACTTGTATTTCCAATGACTGGCAAAGGTGACTGTAAATTATCATGCCTGGATTCTTTCTCTGTTGGTTCCAAATCTATGGTAGCCCTATCATTAGCTGAATTGCCTGGAGATAGCGGGCAAATTGTCCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTATTGTGGTGGAAGGACAGGAAAGCTTGTACATGCATGTGAGCTAAAAGGGCAAACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATAAGCATCAATGGGGaagtaaacaatatttttctgGTGAGTTCATCTCAGGATAAAGGCATACGAATTTGGAAGATGACGTTACGCAGCCCTATGTCCAATGGACATGGCATATACATGACAGGAGAAATAAGCTTATCATCCTATGTAGAAGGTCCTGTACTTGTGGCTGGTACATCTTCTTTTCAGATATCCTTAGAATCTCTTTTAATTGGACATGAGGATTGGGTATATTCGGTAATGTGGCAACCCCCTTTGGTTGCATCCATGGAAGGGGATGCCCATTATCAACCGCTAAGTATCTTATCTGCATCTATGGACAAGACTATGATGATCTGGCAACCTGAAAAGACTTCCGGTGTTTGGATGAATGTGGTCACTGTTGGGGAACTAAGTCACTGTGCTCTGGGTTTTTATGGTGGTCACTGGGGCCCAAATGGAGGTTCAATTTTAGCACACGGATATGGCGGATCTTTCCATCTATGGAAAAATGTTGGTAATGATAATTGGCTGCCGCAAAAGGTTCCCTCTGGTCATTTTGCATCAGTGACTGATATTGCATGGGCTAGATCTGGTGATTATATTATGTCTGTCAGTCATGACCagACAACTAGAATTTATGCTCCATGGAAAGTTGAGGCTTCTCTCCAAGATGGAGAATTTTGGCATGAAATAGCTCGCCCTCAAGTTCATGGGCATGATATAAATTGTATGGCAGTTATTCATAGTAAGGGGAATCATCGTTTTGTCAGCGGAGCTGAAGAAAAAGTTGCCAGGGTGTTTGAAGCCCCATTATCATTTTTGAAGACATTAAATAATGCCACTTTGCAGAAGTccttttgttccaatgatgtcTTGGGAGATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTGTCACAGAAACCTATTTATGTTCAAGCTGCACATGAGGCCCCTGAAAGAAGTGGGATTGATGGTCTTGACACCCTTGAAACTATTCCTGACGCCGTTCCAACTGTGTTCACTGAACCTCCAATTGAAGATCAACTGGCTTGGCATACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAATGAACTATTTTCTTTATGCTGCAATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGGCCCAATCTGCAGCTGTTGCAGAGGTATGGCTTTGGCAGGTGGGCTCATGGAAAGCAGTTGGCCGCTTGCAATCCCACAGCTTAACAGTGACACAGATGGAGTTCTCACGTGATGACAACTTTCTTTTGACTGTTTCAAGGGATCGCCAGTTCTCTGTTTTTTCAATCACCAGAACAGGCACCGGGGATATTAGTTATAGTCTTCTAGCGAGGCAGGAGGGCCACAAGCGGATTATCTGGTCGTGTTCTTGGAATCCACATGGCCATGAATTTGCAACAGGTTCACGGGATAAGACAGTGAAAATCTGGGCCATAGAGGGGGACTCCGTCAGGCAGCTTATGACTTTACCTCAATTTATGAGTAGTGTGACAGCATTATCTTGGGTTGGTCTCCATCATCAGAGAAATAATGGACTTGTAGCTGTCGGAATGGAAAATGGCCATATAGAATTGTGGAATCTGTCTTATAACAGAGCAGATAATGGGAGCATAGCAGCACCAGGTCTGGCTGCTGCTCTTGCTGTACGTATAGATCCTTTTATATGCCATGCCTCTACTGTAAACCGTCTAGCATGGAAGAAAAATGAGGATGATCACACGAGTATGCAACTTGCTTCTTGTGGAGCTGATAATTGTGTAAGAGTGTTTGATGTAACTgtttaa 2508 0.4318 MRSGGGEVEVKRVFIGAGCNRIVNNVSWGASGLVSFGAHNAVAIFCPKSAQILTTLPGHKAVVNCTHWLPTAKFLFKAKQLEQHYLLSGDADGAIILWELSLAHGKWRQVLQLPQSHKKGVTCISGIMVSQTEAMFASTSSDGTVCVWELVFPMTGKGDCKLSCLDSFSVGSKSMVALSLAELPGDSGQIVLAMGGLDNKIHLYCGGRTGKLVHACELKGQTDWIRSLDFSLPISINGEVNNIFLVSSSQDKGIRIWKMTLRSPMSNGHGIYMTGEISLSSYVEGPVLVAGTSSFQISLESLLIGHEDWVYSVMWQPPLVASMEGDAHYQPLSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWGPNGGSILAHGYGGSFHLWKNVGNDNWLPQKVPSGHFASVTDIAWARSGDYIMSVSHDQTTRIYAPWKVEASLQDGEFWHEIARPQVHGHDINCMAVIHSKGNHRFVSGAEEKVARVFEAPLSFLKTLNNATLQKSFCSNDVLGDVQILGANMSALGLSQKPIYVQAAHEAPERSGIDGLDTLETIPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCNHKGELVASSCKAQSAAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSRDDNFLLTVSRDRQFSVFSITRTGTGDISYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAIEGDSVRQLMTLPQFMSSVTALSWVGLHHQRNNGLVAVGMENGHIELWNLSYNRADNGSIAAPGLAAALAVRIDPFICHASTVNRLAWKKNEDDHTSMQLASCGADNCVRVFDVTV 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0373 835 Pfam WD domain, G-beta repeat 51 98 IPR001680 GO:0005515
Ssu7g0373 835 Pfam WD domain, G-beta repeat 218 258 IPR001680 GO:0005515
Ssu7g0373 835 Pfam WD domain, G-beta repeat 114 148 IPR001680 GO:0005515
Ssu7g0373 835 Pfam WD domain, G-beta repeat 405 440 IPR001680 GO:0005515
Ssu7g0373 835 Pfam WD domain, G-beta repeat 688 718 IPR001680 GO:0005515
Ssu7g0373 835 PANTHER ELONGATOR COMPLEX PROTEIN 2 7 834 - -
Ssu7g0373 835 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Ssu7g0373 835 PRINTS G protein beta WD-40 repeat signature 706 720 IPR020472 -
Ssu7g0373 835 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Ssu7g0373 835 SUPERFAMILY WD40 repeat-like 11 326 IPR036322 GO:0005515
Ssu7g0373 835 SMART WD40_4 724 768 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 631 670 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 296 347 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 209 258 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 106 149 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 402 441 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 451 495 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 49 99 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 680 719 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 584 628 IPR001680 GO:0005515
Ssu7g0373 835 SMART WD40_4 788 832 IPR001680 GO:0005515
Ssu7g0373 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 728 IPR001680 GO:0005515
Ssu7g0373 835 Gene3D - 173 287 IPR015943 GO:0005515
Ssu7g0373 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 671 IPR001680 GO:0005515
Ssu7g0373 835 PANTHER WD REPEAT-CONTAINING 7 834 - -
Ssu7g0373 835 Gene3D - 575 676 IPR015943 GO:0005515
Ssu7g0373 835 Gene3D - 677 835 IPR015943 GO:0005515
Ssu7g0373 835 Gene3D - 408 521 IPR015943 GO:0005515
Ssu7g0373 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 440 IPR001680 GO:0005515
Ssu7g0373 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 721 - -
Ssu7g0373 835 Gene3D - 288 407 IPR015943 GO:0005515
Ssu7g0373 835 SUPERFAMILY WD40 repeat-like 192 771 IPR036322 GO:0005515
Ssu7g0373 835 Gene3D - 2 172 IPR015943 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0373 7 6667363 6673031 Ssu7g0373 7 6667363 6673031 ECH