Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0371 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGACAAACAGGATGATGGCATAATTGATCTGGGTCTTAGTCTCGGAACTGTTCAACATGAAGCTTACCATTCTTCTGGCAACTTGTATGATGATGACCTTATGGACTGGCCTCACTCTAATCTCAATCTCAAGAATTCAAACACAATGCATTCTAGATCTGTCCACGAAAATTTTGAAGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGACGGGCTTATGTGAAGGTTAACATGGATGGGGTTACCATTGGAAGGAAAATTTGTGTGCTTGATCACGGTGGATACTCAAGTCTAGCACTCCAATTAGAAGACATGTTTGGAAGCCATTCTGTTTCTGGATTACGATTGTTCCAATCGGGATCAGAGTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGGGCTGTCGGTGATGTACCATGGAAAGAGTTTATAGAACGTGTGAAGCGGTTGAGGATTGCAAGCAAGAATGCGGGCATTGTTTCCTGTTCTTCTAGATACATCTAA 573 0.4154 MDSNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSGNLYDDDLMDWPHSNLNLKNSNTMHSRSVHENFEEEIEGVQSNERRAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGSHSVSGLRLFQSGSEYSLFYKDRQDNWRAVGDVPWKEFIERVKRLRIASKNAGIVSCSSRYI 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0371 190 SUPERFAMILY CAD & PB1 domains 91 176 - -
Ssu7g0371 190 Gene3D - 86 187 - -
Ssu7g0371 190 Pfam AUX/IAA family 68 176 IPR033389 -
Ssu7g0371 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 180 IPR003311 GO:0005634|GO:0006355
Ssu7g0371 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 180 - -
Ssu7g0371 190 ProSiteProfiles PB1 domain profile. 92 180 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0371 Ssu-Chr7 6641209 6643089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0371 82 178 B3 DNA Binding Superfamily AT1G34410 36.082 1.48e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ssu7g0371 AUX_IAA 7.9e-23 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0371 7 6641209 6643089 Ssu7g0371 7 6641209 6643089 ECH