Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0370 ATGTTCCCTTTTGTTTTCCTGTTTTTCCATCTTTGCTTCAACTCTCTTGCACCTGTGGTGTATTCTCTGAATGCCGAAGGCTCTGTGCTTTTGACACTAAAGCAGTCACTCACAGACCCCCAAGGGTCCATGAGTAACTGGAATTCCTCTGATGAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAAACCGTTGTGTCCATTAGCATCCCAAAGAGGAAACTCTATGGCTCTCTTCCCTCTTCTCTAGGATCTCTCTCCCAGCTCCGCCATGTCAACTTCAGGAACAACAAGCTCTTTGGAAACTTGCCTGCACAGCTCTTTCAGGCTCAGGGACTGCAAAGCTTGGTGCTTTATGGCAATTCACTTTCTGGGTCTGTTCCAAGTGAGATTCAGAACCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTCAATGGCTCATTGCCTGCTGCAATTGTCCAATGCAAGAGACTTAAAACCCTTGTTCTCAGTCGGAACAATTTCACTGGCCCTTTGCCAGATGGGTTTGGTACTGGTTTGTTTTCTCTGGAAAGACTAGACCTTTCTTTCAATCAGTTCATTGGGTCAATTCCTAGTGACTTGGGAAATCTGTCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCTAGCCTTGGTAATTTGCCTGAGAAGGTTTACATTGATCTTACTTACAACAATTTAAATGGTCCAATACCCCAAAATGGTGCTTTGATGAATAGAGGGCCAACTGCTTTTATTGGGAATCCTGGTCTATGTGGTCCTCCTTTGAAGAATTCATGTGGTTCTGATACTCCAACTGCTAGTTCACCATCCTCATTTCCATTTATTCCTGATAAATACCCACCTCAGGAAGGTAATGGTTCCATGGGAAGTGAGAAAAACAAAGGGCTAAGCAAGGGAGCTGTTGTTAGCATTGTTGTGGGGGATATAATTGGAATTTGCCTTTTGGGTTTGCTGTTCTCTTTTTGCTACTCAAGGGTTTGTGGTTTTAACGAGGATCTGGATGAAAATGATGTTAGCAAGGGAAGGAAAGAGTGCTTCTGCTTCAGAAAGGATGAATCTGAGGTCCTATCTGATAATAATGTTGAGCAATATGATCTTGTCCCATTAGATTCCCATGTGAACTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTCTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGGCTTGCTTTGGCTGTGAGGAGATTGGGGGAGGGAGGTTCTCAAAGGTTTAAGGAGTTCCAAACAGAGGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCtcatatatgattatatacCCAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGCTGGACTTGTCACATTCACACCACTATCTTGGTCGTATAGATTGAAAATCATGAAAGGAACTGCAAAAGGATTGGTCTATCTGCATGAATTTAGCCCCAAAAAATATGTCCATGGAGACCTCAAGCCAAGTAACATACTTCTTGGACATAACATGGAACCCCACATTTCTGACTTTGGAGTTGGGCGCCTTGCAAATATTGCTGGAGGCACCCCAACCATTCAATCCAACCGAGTGGCCGCAGAGAAACTTCAAGGAAGACAAAAGAGCATGTCCACTGAAGTCACAACCAATGTTTTGGGAAACGGTTATCAGGCTCCAGAGGCACTGAAAGTGGTGAAGCCATCGCAGAAGTGGGATGTTTACTCATATGGTGTGATATTGTTGGAAATGATCACAGGAAGATCATCCATTGTCCAAGTGGGGAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGAGGAAAAGCAGCCACTCTTAGAGGTGTTAGACCCGTACTTGGCTGAAGATGCTGATAAGGAGGAGGAGATCATTGCGGTTTTGAAGATTGCAATGGCTTGTGTCCATAGCAGCCCTGAAAAGAGACCTACAATGAGGCACGTGCTTGATGCTTTGGATAGATTGACTATTTCATCTGATTGA 2124 0.4322 MFPFVFLFFHLCFNSLAPVVYSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDENPCSWNGITCKDQTVVSISIPKRKLYGSLPSSLGSLSQLRHVNFRNNKLFGNLPAQLFQAQGLQSLVLYGNSLSGSVPSEIQNLRYLQTLDLSQNFFNGSLPAAIVQCKRLKTLVLSRNNFTGPLPDGFGTGLFSLERLDLSFNQFIGSIPSDLGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTYNNLNGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCGSDTPTASSPSSFPFIPDKYPPQEGNGSMGSEKNKGLSKGAVVSIVVGDIIGICLLGLLFSFCYSRVCGFNEDLDENDVSKGRKECFCFRKDESEVLSDNNVEQYDLVPLDSHVNFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLATAIHGKAGLVTFTPLSWSYRLKIMKGTAKGLVYLHEFSPKKYVHGDLKPSNILLGHNMEPHISDFGVGRLANIAGGTPTIQSNRVAAEKLQGRQKSMSTEVTTNVLGNGYQAPEALKVVKPSQKWDVYSYGVILLEMITGRSSIVQVGNSEMDLVQWIQFCIEEKQPLLEVLDPYLAEDADKEEEIIAVLKIAMACVHSSPEKRPTMRHVLDALDRLTISSD 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0370 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Ssu7g0370 707 MobiDBLite consensus disorder prediction 279 293 - -
Ssu7g0370 707 MobiDBLite consensus disorder prediction 279 313 - -
Ssu7g0370 707 ProSiteProfiles Protein kinase domain profile. 403 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0370 707 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515
Ssu7g0370 707 Pfam Protein kinase domain 409 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0370 707 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 706 - -
Ssu7g0370 707 Gene3D Ribonuclease Inhibitor 77 283 IPR032675 -
Ssu7g0370 707 Gene3D Ribonuclease Inhibitor 17 76 IPR032675 -
Ssu7g0370 707 CDD STKc_IRAK 409 702 - -
Ssu7g0370 707 SMART LRR_typ_2 88 112 IPR003591 -
Ssu7g0370 707 SMART LRR_typ_2 136 160 IPR003591 -
Ssu7g0370 707 SMART LRR_typ_2 185 209 IPR003591 -
Ssu7g0370 707 SUPERFAMILY L domain-like 25 276 - -
Ssu7g0370 707 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 4 706 - -
Ssu7g0370 707 Gene3D Transferase(Phosphotransferase) domain 1 479 706 - -
Ssu7g0370 707 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Ssu7g0370 707 SUPERFAMILY Protein kinase-like (PK-like) 408 699 IPR011009 -
Ssu7g0370 707 Gene3D Phosphorylase Kinase; domain 1 371 478 - -
Ssu7g0370 707 SMART serkin_6 408 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0370 Ssu-Chr7 6633969 6636218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0370 1 707 Receptor kinase-like Gene Family AT2G01210 66.990 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu7g0370 Pkinase 3.7e-32 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0370 7 6633969 6636218 Ssu7g0370 7 6633969 6636218 ECH