Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0342 ATGGCGGCAGCACTCATTGCTCGCGTCACGgttttccattttcttcttctcctggTTCAATGTTCCACGAACCCAGACTTCGACGCCCTGGTGGCCTTCAAAACCGCTTCAGACGCGTCCCGAAATCTCGCAACATGGAACAACAGCACGAACCCGTGTTCCTGGAGCGGCGTGTCGTGCATTCGAGACCGAGTCTCGCGGCTCGTTCTCGAAAACCTCGACCTCCAAGGTTCCATTCACGCCTTAACTTCCCTCACTCACCTCCGAGTTCTGAGTCTCAAAGGGAACCGTTTCTCCGGTTCTGTTCCCAACCTCTCCAACCTCACTTCCCTGAAGCTTCTCTTCCTGTCTCGCAACCAGTTCTCCGGCGAGTTCCCGGCGACGGTCACGTCGCTCTTCCACCTCTACCGCCTCGATCTGTCCAACAACAACTTCTCCGGCGAGATTCCGGCGACTCTCACCCACCTGACCCACCTCCTCACTCTCCGCCTCGACGGGAACAACTTCTCCGGCCACATTCCCGACGTGAACCTGCCCACCCTGCAAGAGTTCAACGTCTCCGGCAACGGACTCTCCGGCGAGATACCCAAGGCGTTGTCAAGTTTCCCCGAATCCTCGTTCGGACGAAACCCGTTTCTCTGCGGAGCCCCAATCAAAAAATGCTCATCCGACCCGACCAAACCGGGGTCCGAAGGCGCCATTGCTTCACCACTGTTGCCACAAAACAACCACCCGACAACCACTGTATCATCTTCCCCCAGTTCAATGCCAAAAACACCAACATCAAGTGGTAAAAGCCACGAAAAGGGTGCTTCGAAGATAAGTCCGGTGGCACTCATAGCTATTATAGTGGGTGATGTGTTGGTTCTCGCCGTGGTGtctttgcttttgttttgcTACTTCTGGAGGAACTACTCTGCGAAGTTGAAGGAGGGGAAGGGGTCGAAGCTGTTTGAGAGTGAGAAGATTGTTTATTCGTCGAGTCCGTACCCTGCTCAGGGAGGGTTCGAGAGGGGTCGAATGGTGTTCTTCGAGGGGGAGAAAAGGTTTGAGCTTGAGGACCTGTTGCGAGCCTCTGCGGAAATGCTCGGAAAGGGTGGGTTCGGGACCGCGTACAAAGCGGTGCTTGATGATGGCAATGTGGTTGCGGTGAAGAGACTCAAGGACGCGCAGATAACGGGGAAGAGAGAGTTCGAGCAGCACATGGAGGTGTTGGGAAGGTTGAGACATCCCAACGTTGTTAGCTTGAGGGCTTACTATTTCGCGCGCGAGGAGAAGTTGTTGGTCTATGATTACATGCCCAATGCCACCTTGTTCTGGCTCCTTCACGGGAACCGGGGACCCGGACGAACCCCACTGGACTGGACCACGCGGCTCAAGATAGCAGCGGGAGCGGCACGAGGCGTGGCTTTCATTCATAACTCGTGCAAGTCCCTTAGACTCACCCACGGTAACATCAAATCCACCAACGTCTTACTCGACAAGCATGGAAACGCGCGGGTCTCGGATTTTGGGCTCTCGGTCTTCGCGGGCCCGGGCCCAGTGGGCGGGAGATCCAACGGCTACCGCGCGCCGGAGGCATCGGACGGCCGAAAACAGTCCCAGAAGTCTGACGTGTACTCTTTCGGTGTGCTCCTGCTGGAGCTGCTCACGGGGAAGTGCCCCTCCGTGGTCGAGAGTGCAGGGAGTGCCTACGGTGGGGTCGTGGACCTACCGAGGTGGGTCCAGTCAGTGGTGAGGGAGGAGTGGACCGCTGAGGTGTTTGATCTGGAGCTGATGAGGTATAAGGATATTGAGGAGGAGATGGTGGGGCTGCTTCAGATTGCAATGGCGTGTACCGCGGCTGCACCTGATCAACGGCCCAGGATGAGCCACGTCGTCAAGATGATCGAGGAGTTGCGTGGGGTCGAGGTGTCGCCGTGTCATGACACGTTGGATTCGGTATCTGAGTCACCTTCCTTGTCTGAAGATGCGTGTGGAACGAGTCAGGGAAGTGAAATAAGGGACCAGGTACTATACTAA 2022 0.5539 MAAALIARVTVFHFLLLLVQCSTNPDFDALVAFKTASDASRNLATWNNSTNPCSWSGVSCIRDRVSRLVLENLDLQGSIHALTSLTHLRVLSLKGNRFSGSVPNLSNLTSLKLLFLSRNQFSGEFPATVTSLFHLYRLDLSNNNFSGEIPATLTHLTHLLTLRLDGNNFSGHIPDVNLPTLQEFNVSGNGLSGEIPKALSSFPESSFGRNPFLCGAPIKKCSSDPTKPGSEGAIASPLLPQNNHPTTTVSSSPSSMPKTPTSSGKSHEKGASKISPVALIAIIVGDVLVLAVVSLLLFCYFWRNYSAKLKEGKGSKLFESEKIVYSSSPYPAQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRLRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLTHGNIKSTNVLLDKHGNARVSDFGLSVFAGPGPVGGRSNGYRAPEASDGRKQSQKSDVYSFGVLLLELLTGKCPSVVESAGSAYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTAAAPDQRPRMSHVVKMIEELRGVEVSPCHDTLDSVSESPSLSEDACGTSQGSEIRDQVLY 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0342 673 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Ssu7g0342 673 Gene3D Phosphorylase Kinase; domain 1 337 432 - -
Ssu7g0342 673 MobiDBLite consensus disorder prediction 644 673 - -
Ssu7g0342 673 PANTHER - 21 649 - -
Ssu7g0342 673 CDD STKc_IRAK 363 633 - -
Ssu7g0342 673 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Ssu7g0342 673 ProSiteProfiles Protein kinase domain profile. 357 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0342 673 ProSiteProfiles Leucine-rich repeat profile. 87 109 IPR001611 GO:0005515
Ssu7g0342 673 MobiDBLite consensus disorder prediction 642 673 - -
Ssu7g0342 673 SUPERFAMILY Protein kinase-like (PK-like) 361 630 IPR011009 -
Ssu7g0342 673 Pfam Protein kinase domain 361 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0342 673 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 649 - -
Ssu7g0342 673 MobiDBLite consensus disorder prediction 223 269 - -
Ssu7g0342 673 Gene3D Transferase(Phosphotransferase) domain 1 433 646 - -
Ssu7g0342 673 Gene3D Ribonuclease Inhibitor 19 84 IPR032675 -
Ssu7g0342 673 Gene3D Ribonuclease Inhibitor 85 228 IPR032675 -
Ssu7g0342 673 SUPERFAMILY L domain-like 43 219 - -
Ssu7g0342 673 MobiDBLite consensus disorder prediction 236 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0342 Ssu-Chr7 5914346 5917169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0342 26 663 Receptor kinase-like Gene Family AT1G68400 67.732 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu7g0342 Pkinase 1.9e-34 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0342 7 5914346 5917169 Ssu7g0342 7 5914346 5917169 ECH