Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0331 ATGCCGGCGAAGGACGACGGTTCCGACAAGGAGAAGTGCCTCGATCTCTTTCTGAAGATCGGCCTAGACGAGCGCACCGCTCGAAACACCGTCGCCAATAACAAAGTCACCGCCAATCTCACTTCCGTCATCAACGAGGCTGGTGTTACCGATGGATGCAGTCGAACGGTTGGAAATCTTATTTACACGGTTGCAACGAAGTACCCTGCAAATGCCTTACCGTATCGCCCAACATTACTACAATACATTGTTTCGTCAAAGGTGAAAACAACAGCACAGTTGGATGCAGCATTATCATTTCTTGCTACCACAGGCTTGGAGAATCTTGATTTGAACAAGTTTGAAGAAGCTTGTGGTGTTGGTGTCGAGGTTTCAACAGAAGATATCAAACAAGCTGTTAATGAAGTTGTTGAGGAGAACAAGGCTACAATTTTGGAGCTACGTTATCGAACAAATGTGGGTGAGTTGCTTGGGCATGTGCGCAAGAGGCTGCCATGGGGTGATGCAAAAGTTGCCAAGGATAAGGCAGCACCTGTTGCTACTCCTGAAAAGTCACCTGAAGAAGATCTTAATCCATTTTTAATATTCCCCAATCCAGAGGAAAATTTCAAGGTGCATACTGAAGTGCCTTTTAGTGATGGTAGTATTCTGAGATGTTGCAATACAAGGGCACTTCTTGACAAACACTTAAAGGCAACAGGTGGAAAAGTTTTGACCCGCTTTCCACCCGAACCAAATGGATATTTGCATATTGGTCATGCAAAAGCAATGTTTATTGATTTTGGGTTGGCAAAAGATAGGGATGGAGGTTGCTATCTGAGGTATGATGATACAAATCCTGAAGCAGAAAAAAGGGAGTATATTGATCACATTGAAGAAATTGTCCAGTGGATGGGTTGGAAACCACTCAAGATTACTTACACAAGTGATTACTTCCAAGAATTGTATGAATTAGCAGTGGAGCTCATAAAAAGGGGTCATGCGTATGTTGATCATCAGACACCTGATGAGATAAAGGAGTATAGGGAGAAGAAATTGAACAGTCCTTGGAGAGACAGACCAATTTCAGAGTCATTGAAGCTCTTTGAGGAAATGAAAAATGGCCATGTAGAAGAAGGAAAAGCCACACTTAGAATGAAGCAAGACATGCAGAGTGATAACTACAATATGTATGACCTTATTGCGTATAGAATTAAGtttacTCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCTCACTGCATTGTGGATTCTCTAGAGAATATCACCCATTCACTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCTTTAGGCATTTACCAACCTTATGTATGGGAATATTCAAGGTTGAATGTCTCTAACACAGTTATGTCTAAGCGAAAGCTAAATCGTCTAGTTACAGAGAAGTGGGTTGATGGGTGGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACCCCAACTTCAATCAATGCTTTTGTCCGTGGAATTGGAATAACTAGAAGTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGAATTGAACAGAACAGCTCCTCGCACAATGGTTGTCCTACATCCCCTCAAGGTTGTTATCACTAATCTTGAAGCCAACTCAGCAATTGAGGTTGATGCAAAGAAATGGCCTGATGCTCAAGCTGATGATGCTTCTGCTTTCTACAAGATTCCATTTTCCAATGTTGTATATATTGAACGTTCGGACTTCCGGATGCAAGATTCGAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGATATGCATTTCCCATAAAGTGCACCGAAGTTATTCTAGCTGATGATAATGAGATAATTCTTGAAATTCGAGCTGAGTATGATTCTTCAAAGAAGACCAAGCCTAAGggGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGGTGGAAGTCAGGTTGTTTGAGAGACTATTCCTATCAGAGAATCCTGCTGAACTTGACAACTGGCTAGGTGATTTAAGCCCTAATTCCAAATTGATAATTCCCAATGCATGCGGTGTGTCCTCCCTACAGAATGCGAAAGTTGGGGACAATTTccaatttgaaagattagGCTATTTTGTGGTCGACCGGGATTCAACTCcagaaaaacttgtttttaatagGACTGTCACCTTAAAGGACAGCTATAGTAAAGGTGGAAAGTAG 2283 0.4148 MPAKDDGSDKEKCLDLFLKIGLDERTARNTVANNKVTANLTSVINEAGVTDGCSRTVGNLIYTVATKYPANALPYRPTLLQYIVSSKVKTTAQLDAALSFLATTGLENLDLNKFEEACGVGVEVSTEDIKQAVNEVVEENKATILELRYRTNVGELLGHVRKRLPWGDAKVAKDKAAPVATPEKSPEEDLNPFLIFPNPEENFKVHTEVPFSDGSILRCCNTRALLDKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLRYDDTNPEAEKREYIDHIEEIVQWMGWKPLKITYTSDYFQELYELAVELIKRGHAYVDHQTPDEIKEYREKKLNSPWRDRPISESLKLFEEMKNGHVEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNVSNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMTPTSINAFVRGIGITRSDGTLISVERLEYHVREELNRTAPRTMVVLHPLKVVITNLEANSAIEVDAKKWPDAQADDASAFYKIPFSNVVYIERSDFRMQDSKDYYGLAPGKSVILRYAFPIKCTEVILADDNEIILEIRAEYDSSKKTKPKGVLHWVAQPSPGVDPLKVEVRLFERLFLSENPAELDNWLGDLSPNSKLIIPNACGVSSLQNAKVGDNFQFERLGYFVVDRDSTPEKLVFNRTVTLKDSYSKGGK 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0331 760 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 544 735 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Ssu7g0331 760 PANTHER GLUTAMINE-TRNA LIGASE 13 175 - -
Ssu7g0331 760 PANTHER GLUTAMINE-TRNA LIGASE 183 759 - -
Ssu7g0331 760 SUPERFAMILY Nucleotidylyl transferase 236 550 - -
Ssu7g0331 760 TIGRFAM glnS: glutamine--tRNA ligase 237 757 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Ssu7g0331 760 Gene3D Ribosomal Protein L25; Chain P 668 753 IPR020056 -
Ssu7g0331 760 Gene3D HUPs 213 547 IPR014729 -
Ssu7g0331 760 PANTHER OS05G0182800 PROTEIN 183 759 - -
Ssu7g0331 760 Pfam tRNA synthetases class I (E and Q), catalytic domain 236 541 IPR020058 GO:0004812|GO:0005524|GO:0043039
Ssu7g0331 760 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 168 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Ssu7g0331 760 Gene3D - 7 122 IPR042558 -
Ssu7g0331 760 Gene3D Ribosomal Protein L25; Chain P 548 667 IPR020056 -
Ssu7g0331 760 SUPERFAMILY Ribosomal protein L25-like 544 754 IPR011035 GO:0006412
Ssu7g0331 760 Gene3D - 123 177 IPR042559 -
Ssu7g0331 760 CDD GlnRS_core 236 546 - -
Ssu7g0331 760 PANTHER OS05G0182800 PROTEIN 13 175 - -
Ssu7g0331 760 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 243 254 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu7g0331 760 PRINTS Glutamyl-tRNA synthetase signature 240 252 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ssu7g0331 760 PRINTS Glutamyl-tRNA synthetase signature 269 282 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Ssu7g0331 760 PRINTS Glutamyl-tRNA synthetase signature 414 424 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0331 Ssu-Chr7 5664748 5674243 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0331 7 5664748 5674243 Ssu7g0331 7 5664748 5674243 ECH