Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0330 ATGTCCACAATTGCAAAGAGAGAGTTGGGTTCTAATGATGAAGAGAGTGAGCTGAGGAGAGGCCCTTGGACTCTTGAAGAAGACAGCCTACTCATTCACTATATTGCTCGTCATGGTGAAGGGCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGAACTGGAAAAAGCTGCAGACTCAGATGGCTGAATTATTTGAAACCAGACATTAAGAGAGGGAACCTCACTCCACAGGAGCAACTGTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACAAGGGTACAGAAACAGGCACGCCAACTTAACATTGAGTCTGGAAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGATTGCTCCAAAAGATGGAACAGAACAATTCTCCAAGTTCTCACTCCTCCATGACAAACATGATGAATTTAGGGAATTCTGGAGAAGCTTCTATGAGTTCAATCTCAATGTCAAGCAGCTTCAATATTCCTTCTATGTCTTCATCATCTCCTCCACAAAGGGAATTTATGGATGCTGGAAATCATTTTACTACTATGTCCAACCCCATCAATCCATCCCCGGATTCCTTCCAATTTTCACAGCTACTTGAAATATCAGAACACCCCAAAAGTCCTCCCAATATGCTTGAGAACAATGTCTACAGCTACCCAATCCAGGACAATTGCTATGTTAATACCAATAACTATGGCATGGAAAGCCTAAACCTGGATCCCCTTTCAGCAATGGAAACTTATGACTTCCCACAGTTTGATTTTCAGACTGCTGGGAATGGATGGATGTTAGACAGCATAGGGGATACTACTTTATGGAACATGGATGCTATGTGA 921 0.4245 MSTIAKRELGSNDEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNSPSSHSSMTNMMNLGNSGEASMSSISMSSSFNIPSMSSSSPPQREFMDAGNHFTTMSNPINPSPDSFQFSQLLEISEHPKSPPNMLENNVYSYPIQDNCYVNTNNYGMESLNLDPLSAMETYDFPQFDFQTAGNGWMLDSIGDTTLWNMDAM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0330 306 SMART sant 19 69 IPR001005 -
Ssu7g0330 306 SMART sant 72 120 IPR001005 -
Ssu7g0330 306 Gene3D - 76 118 - -
Ssu7g0330 306 MobiDBLite consensus disorder prediction 1 20 - -
Ssu7g0330 306 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Ssu7g0330 306 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 5 304 - -
Ssu7g0330 306 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 304 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu7g0330 306 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Ssu7g0330 306 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Ssu7g0330 306 CDD SANT 77 116 IPR001005 -
Ssu7g0330 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Ssu7g0330 306 CDD SANT 22 67 IPR001005 -
Ssu7g0330 306 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Ssu7g0330 306 Gene3D - 17 73 - -
Ssu7g0330 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Ssu7g0330 306 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Ssu7g0330 306 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0330 Ssu-Chr7 5643656 5644765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0330 15 270 MYB Transcription Factor Family AT1G68320 53.455 6.91e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g0330 Myb_DNA-binding 3.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0330 7 5643656 5644765 Ssu7g0330 7 5643656 5644765 ECH