Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0321 ATGAGACCAGAAGGAAACCCATTAGACCTTAACAATTTGCCCGATGAGTACTCTAGAGATGGCAAACAGGTCCTCGAAGACCATACCTCTTCGCCCGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGACTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAGCTGGTCTTCCGTAGTGATCATAACGTTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAACCAATAGGAACCGGGGGTTATCATCCATCAGGAGATCCAACAGTGCCGCTGAGATTCCCGAGATACTTCTCAGGCTCATCCTCAACCCACATGCCACCACCGccgccaccgccaccgccaccgccaccacaACCATACCTATACGCTTCACCTTCGAGGCCAGTGTCTTTTGGCTCATCACATTTCCCTCACCAGCATGCGGTGAACGACTACTATGTGGGTCACGTGATGAGTGGTGGCAGCCACGGCCACGGGCCCTATGTGGGAGGAGGAGAGAGTACAAGTAGTTACACGTGCATTGGCGCACCGGTGGGACAAGGTGGGTTCGGTGGTGGTGGTAAGGACGGGTCACTGCACAGTAATCAGGAGGAAGGGTTGAGTTGGGGAAGGAGCTACTCAGGCGCACAGCATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 786 0.5153 MRPEGNPLDLNNLPDEYSRDGKQVLEDHTSSPGCRKKKSGGKDGKDDCGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRSDHNVAAQGAPHLGCCQPIGTGGYHPSGDPTVPLRFPRYFSGSSSTHMPPPPPPPPPPPPQPYLYASPSRPVSFGSSHFPHQHAVNDYYVGHVMSGGSHGHGPYVGGGESTSSYTCIGAPVGQGGFGGGGKDGSLHSNQEEGLSWGRSYSGAQHRLDPPSAINRFQDGF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0321 261 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Ssu7g0321 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Ssu7g0321 261 MobiDBLite consensus disorder prediction 118 161 - -
Ssu7g0321 261 PANTHER ZINC FINGER PROTEIN JAGGED 1 233 IPR045320 GO:0003700
Ssu7g0321 261 MobiDBLite consensus disorder prediction 1 46 - -
Ssu7g0321 261 Gene3D Classic Zinc Finger 29 104 - -
Ssu7g0321 261 PANTHER ZINC FINGER PROTEIN JAGGED 1 233 IPR031113 GO:0007275
Ssu7g0321 261 SUPERFAMILY beta-beta-alpha zinc fingers 48 98 IPR036236 -
Ssu7g0321 261 MobiDBLite consensus disorder prediction 15 46 - -
Ssu7g0321 261 MobiDBLite consensus disorder prediction 138 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0321 Ssu-Chr7 5425759 5427721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0321 4 216 C2H2 Transcription Factor Family AT1G13400 44.796 1.47e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g0321 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0321 7 5425759 5427721 Ssu7g0321 7 5425759 5427721 ECH