Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0316 ATGAAATTGAGTTGCAATGGGTGTCGCATACTCCGCAAAGGTTGTAGTGACAACTGCATCATTAGGCCCTGCCTTGAGTGGATTAACTCCGGTGAGTCCCAAGCCAACGCCACCCTCTTCCTTGCCAAATTCTATGGTCGTACTGGCTTACTCAACCTCATCACTGCTGCTCCCCAACACCTTGCCCCAGTTGTGTTCAGGTCATTATTGTATGAAGCATGTGGTAGATTAGCAAATCCGACTTATGGGTCATTAGGTTTGTTTTGGACTGGGGAGTGGGCTCAATGTGAAGCTGCAGTTGACGCAGTGCTGAATGGGTCCAAAATCAATGGTGTGACACCTTCTGATTGGCATAGCTCATGGACACTTGGTGATCGTAGTCTGCCAACACGTGATATACGCCATTTGCCGAAGGGGACTAATGTGGATGACATGAGAGATAGAATTGGGTTTAAGAGAGTTGGGCAAGTTTTCAAACCCAAACCACGGGTGGGTTTGGTGGCCTCGACTTCATTGTGGAAACCCAATTGGGAGAGTGAGAGCATGGAAGTCGTGGAGACTTCATTGGTGAACCAAGATGGTGAAACCAAATTGGACTTAGAACTCACACTTGGCTTTCGTTGCCAGTCAACTCGTGGcaagaaaacatattattaa 657 0.4673 MKLSCNGCRILRKGCSDNCIIRPCLEWINSGESQANATLFLAKFYGRTGLLNLITAAPQHLAPVVFRSLLYEACGRLANPTYGSLGLFWTGEWAQCEAAVDAVLNGSKINGVTPSDWHSSWTLGDRSLPTRDIRHLPKGTNVDDMRDRIGFKRVGQVFKPKPRVGLVASTSLWKPNWESESMEVVETSLVNQDGETKLDLELTLGFRCQSTRGKKTYY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0316 218 PANTHER LOB DOMAIN PROTEIN 1 216 - -
Ssu7g0316 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 216 - -
Ssu7g0316 218 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Ssu7g0316 218 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0316 Ssu-Chr7 5320296 5321278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0316 1 138 AS2 family AT1G68510 63.309 4.73e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu7g0316 LOB 4.1e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0316 7 5320296 5321278 Ssu7g0316 7 5320296 5321278 ECH
Ssu7g0316 7 5320296 5321278 Ssu3g0064 3 1296423 1297483 ECH
Ssu7g0316 7 5320296 5321278 Ssu9g0576 9 27069098 27070782 ECH