Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0315 ATGAGTTGCTCAGCTAAGAACGCGGCAAACGCGGTCGGTGGCAAAACGGCAAGAGCATGCGACAGCTGCATAACGAAGCGGGCACGCTGGTACTGTGCCGCCGATGATGCTTTTCTCTGCCAAGCTTGCGACTCTTCGGTTCACTCGGCCAATTCGTTGGCTCGAAGACACGAAAGAGTCCGCTTGAAAACGGCGTCGCACAAGTCCACTGATGAACAACAACCTCCCACGTGGCACACTAAGAAAGCTCGAACGCCGAGACATGGGAAACACTCTTCAGCCACTCGTAATAACCCCTTCCATCTGGTCCCTGAAATGGGTTCGGATGAGGTGACTTCTCATGACGAGAACGAGGAGCAGCTTCTTTATAGGGTTCCCATATTCGACCCTTTTGTTGCTGAGCTATGTGGGACTAATAGTTCTCCTTCTTCTGTGACTTCAACTGATCAAGGAGTGGCAGCCGCTGCTGAGGTTCAAAACAAAGGCAATGTTTTTTGTAACAATATTAATGAGATGGAAAACTTGCACGGGATGCTTCCTTCGGATGCAGAACTTGCTGAGTTCGCTGCTGATGTTGAGAGCTTGTTGGGTAGGGGACTTGAAAACGAGTGCGTGGGGATGGAAGACCTGGGACTCGTTGATGCCAAAGAGGAGTGCTCGGTGGGTAGTGGGAAGGTGAAGGTGGAAGAGGAAGAGAGCCCTGTGGAGATGGAGATGGTGGTGGGAAGAGATCAAGCGTTTGAGTTGGGGTTTGATTATGAAACGTGTGAAGAGGTGAAGGAGAAGGTTGGTGATTTGGATGTGGGCAAATTAGATAACGGGAATGGTGGAGAACTCAGAGAGAATGCTGAGACCAAAAGGAAGAAGATATCGTTGCAGCTTGATCATGAGGCAGTAATTATCGCCTGGGCGAGCCAAAAGTCTCCGTGGACCACTGGTGACAGGCCAAATTTGGACCCTGATGAGTGCTTGCCTGAATGCATgGGAACTTGTGGAACGGCGCTTCATCATCCTTATGGTGAACTGGGTGGATTTGGGATTCATCCGGTAATAATAGACGGGGGCAGAGAGGCAAGGGTGTCAAGGTACAGAGAAAAACGCCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTGAAGAGGGCTTCCTTCGCAGCACCAACATTTcctttgttaaataaataa 1236 0.4919 MSCSAKNAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASHKSTDEQQPPTWHTKKARTPRHGKHSSATRNNPFHLVPEMGSDEVTSHDENEEQLLYRVPIFDPFVAELCGTNSSPSSVTSTDQGVAAAAEVQNKGNVFCNNINEMENLHGMLPSDAELAEFAADVESLLGRGLENECVGMEDLGLVDAKEECSVGSGKVKVEEEESPVEMEMVVGRDQAFELGFDYETCEEVKEKVGDLDVGKLDNGNGGELRENAETKRKKISLQLDHEAVIIAWASQKSPWTTGDRPNLDPDECLPECMGTCGTALHHPYGELGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLLNK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0315 411 Pfam CCT motif 356 398 IPR010402 GO:0005515
Ssu7g0315 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 4 404 - -
Ssu7g0315 411 SMART bboxneu5 15 62 IPR000315 GO:0008270
Ssu7g0315 411 CDD Bbox1_BBX-like 19 62 - -
Ssu7g0315 411 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 404 - -
Ssu7g0315 411 MobiDBLite consensus disorder prediction 60 115 - -
Ssu7g0315 411 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Ssu7g0315 411 MobiDBLite consensus disorder prediction 60 78 - -
Ssu7g0315 411 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Ssu7g0315 411 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0315 Ssu-Chr7 5313654 5315637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0315 6 403 C2C2-CO-like Transcription Factor Family AT1G68520 45.940 1.21e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu7g0315 zf-B_box 9e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0315 7 5313654 5315637 Ssu7g0315 7 5313654 5315637 ECH