Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0313 ATGCCTCCGGTCTTGCCGGATTTCTCCAACTCGGTCAAGCTTAAGTATGTCAAACTTGGCTACCAATACCTCGTGAACCACATTCTCACCCTCACTCTCATACCCATAATGATTGGCGTCTTCTTAGAAGTGCTTCGCTTAGGCCCAGAAGAGATCCTCAAACTTTGGAACTCTCTCCACTTCGATCTCGTCCAAATCCTCTGCTCGGCCTTCCTCATAATCTTCATAGCCACCGTCTACTTCATGTCAAAACCTCGCACAATCTACCTCGTCGACTACGCATGTTTCAAGCCACCAGTTACATGCCGCGTCCCTTTTGCAACCTTCATGGAGCACTCGAGGCTCATCCTCAAGAACAACCCCAAGAGCGTGGAGTTCCAGATGAGGATTCTGGAACGTTCCGGCCTCGGAGAAGAGACATGTTTGCCCCCCCCGATTCACTACATCCCTCCCAAACCAACCATGGAGGCTGCGAGAGGAGAAGCTGAGCTCGTGATCTTCTCGGCCATGGACGCTTTGTTCAGCAAGACTGGCCTGAAGCCAAAGGACATAGACATTCTCATAGTGAATTGCAGCCTCTTTTCCCCCACTCCTTCTTTGTCCGCCATGGTGATCAACAAGTACAAACTCAGGAGCAACATCAAGAGCTTCAACCTCTCTGGCATGGGTTGCAGTGCTGGCCTCATATCCATTGACTTGGCACGTGACCTTCTCCAAGTCCACCCCAACTCAAACGCCGTCGTTGTGAGCACCGAGATCATAACCCCAAACTACTACCAAGGCAACGAGAGAGCCATGCTTCTTCCAAACTGTTTGTTCCGAATGGGGGGTGCTGCTATTTTGTTATCAAACCGTAGGTCTGAACGTAGGAGGGCCAAGTACAGGTTGGTCCACGTGGTTCGCACACACAAAGGTGCTGATGACAAAGCATACCGTTGTGTGTTTGAGGAGGAAGACAAAGAAGGGAAAGTGGGGATTTCACTTCAGAAGGACCTCATGGCCATTGCTGGTGAGGCTCTCAAGTCTAATATCACTACCATGGGTCCTCTTGTGCTTCCAGCTTCGGAGCAGTTACTCTTCCTTCTCACTCTCATTGGGAGGAAAATCTTCAACCCCAAGTGGAAGCCTTACATTCCTGACTTTAAACAAGCCTTTGAGCACTTTTGCATCCATGCTGGTGGCCGTGCTGTCATTGATGAGCTGCAGAAGAATCTTCAGCTCTCTACTGAACATGTTGAGGCCTCTAGAATGACCCTGCACAGGTTTGGGaacacttcttcttcttcgctGTGGTATGAGCTGAACTACATTGAGTCCAAGGGGAGGATGAAGAGAGGAGATAGGGTGTGGCAGATAGCGTTTGGCAGTGGGTTTAAATGCAACAGTGCTGTGTGGAAGTGCAACAGAAGCATTAAGACACCAGTTGATGGGCCTTGGGCTGATTGCATTGATCGTTACCCGGTTCATATTCCTGAGATCGTTAAGCTCTAG 1491 0.4916 MPPVLPDFSNSVKLKYVKLGYQYLVNHILTLTLIPIMIGVFLEVLRLGPEEILKLWNSLHFDLVQILCSAFLIIFIATVYFMSKPRTIYLVDYACFKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPPIHYIPPKPTMEAARGEAELVIFSAMDALFSKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAILLSNRRSERRRAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLQKDLMAIAGEALKSNITTMGPLVLPASEQLLFLLTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSTEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRVWQIAFGSGFKCNSAVWKCNRSIKTPVDGPWADCIDRYPVHIPEIVKL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0313 496 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 384 466 IPR013747 -
Ssu7g0313 496 Gene3D - 112 466 IPR016039 GO:0016746
Ssu7g0313 496 Pfam FAE1/Type III polyketide synthase-like protein 80 368 IPR013601 GO:0006633|GO:0016020|GO:0016747
Ssu7g0313 496 PANTHER 3-KETOACYL-COA SYNTHASE 4 495 - -
Ssu7g0313 496 CDD CHS_like 73 465 - -
Ssu7g0313 496 PIRSF Very_long_ch_3-ktacl-CoA_syn 7 496 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu7g0313 496 SUPERFAMILY Thiolase-like 297 467 IPR016039 GO:0016746
Ssu7g0313 496 SUPERFAMILY Thiolase-like 74 292 IPR016039 GO:0016746
Ssu7g0313 496 PANTHER 3-KETOACYL-COA SYNTHASE 4 495 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0313 Ssu-Chr7 5262456 5263946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0313 5 496 Miscellaneous Gene Families AT1G25450 83.537 0.0 890
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0313 7 5262456 5263946 Ssu7g0313 7 5262456 5263946 ECH