Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0312 ATGCCCGAGTCTCGGAAACAACCGGCTTCTAGACCGAAGCAAAAGCTTCATCACTCCTTGCAAGAGTCCAAGGCCACGAGAAAACTGCGCATCATCTTCGACGATCCTGATGCCACTGATTCATCCGAAGATGAGTCAGTGAACCcgaggaaaattaaaaaaataaaaaaaaccgtGTGTGAGGTCTCACTCCCTCCTCTTCCTCAAACATTCACCTCCCCTGAAACCAGTTCTTGTGAGGTGAACAGCAACAACAATGCAGTGAAGGCTTGCGTTGAAGGTCAACCCCAAAGCAGGAAGAGGGTTTTGACCCAAACCCCATCAACGAGGAGGAACACTTCTGGGAAATACAGAGGTGTTAGGCAGAGAAAATGGGGTAAGTGGGCTGCTGAGATTCGTGACCCGTTTAAGAGTGCTCGTATATGGCTTGGCACTTACAACACCGCAGAAGAGGCTTCCCAAGCCTACGAGGCCAAAAGGCTCGAGTTTGAAGCTATGGCAAAGGCTCAAGCCTACAAAAACGTTTCTGGTTCTGGGTCTGCTAATGGACCTTTGGCTACAACTTCTGATAAGAGTAACTGCTGTAACTCttctgctgctgctgctgctgtgACTGTATCAGAGAAGTTTTCTACTACATCTGAGGACTCAGGGAGTGTGTTGTCGCTCACATCACCGTCTTCTGTGCTTGAGTTGGATACCTCGGCTTCCAAATCCGTTGACAAGGGTAATGTTGTTTCAAGCGAGGAAGCTGTTGAGGCTAATGATTTGGTGGCTGAACTTGCTGGGCTAGAAATACCAGATTTGAGTCTGTTGAACTTGCCACCACCATCTGCTGCTACGGGTGCTGGGGCTGGGCCAAACTTTGGGCTTGATTTTGATTGGTTATCGTTTGATGATTATGAACAGGGTTTTGATGATCTTGGTGGCTTTGAAGATATTCACATTTGTGGGTTTGATGACAATGAGCCTAGTGAGCTTCCTGATTTCGATTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGACTGATGAGCCCCTCAATATACCTTGTGCCTAA 1062 0.4539 MPESRKQPASRPKQKLHHSLQESKATRKLRIIFDDPDATDSSEDESVNPRKIKKIKKTVCEVSLPPLPQTFTSPETSSCEVNSNNNAVKACVEGQPQSRKRVLTQTPSTRRNTSGKYRGVRQRKWGKWAAEIRDPFKSARIWLGTYNTAEEASQAYEAKRLEFEAMAKAQAYKNVSGSGSANGPLATTSDKSNCCNSSAAAAAVTVSEKFSTTSEDSGSVLSLTSPSSVLELDTSASKSVDKGNVVSSEEAVEANDLVAELAGLEIPDLSLLNLPPPSAATGAGAGPNFGLDFDWLSFDDYEQGFDDLGGFEDIHICGFDDNEPSELPDFDFGDFGADEFAGWTDEPLNIPCA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0312 353 MobiDBLite consensus disorder prediction 92 119 - -
Ssu7g0312 353 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Ssu7g0312 353 ProSiteProfiles AP2/ERF domain profile. 116 176 IPR001471 GO:0003700|GO:0006355
Ssu7g0312 353 CDD AP2 116 163 IPR001471 GO:0003700|GO:0006355
Ssu7g0312 353 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Ssu7g0312 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 353 - -
Ssu7g0312 353 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Ssu7g0312 353 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Ssu7g0312 353 SUPERFAMILY DNA-binding domain 116 163 IPR016177 GO:0003677
Ssu7g0312 353 MobiDBLite consensus disorder prediction 1 49 - -
Ssu7g0312 353 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Ssu7g0312 353 MobiDBLite consensus disorder prediction 92 115 - -
Ssu7g0312 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 13 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0312 Ssu-Chr7 5211114 5212175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0312 11 352 AP2-EREBP Transcription Factor Family AT1G68550 34.758 1.21e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu7g0312 AP2 1.8e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0312 7 5211114 5212175 Ssu7g0312 7 5211114 5212175 ECH