LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g0304	ATGGCTTCTCTCCCCAATGCCCTTTCATTCTCCTCATCTCTCTCCACCACCGCCACTCTCCTCCCGTGTCGCCGCTTCACCGCATTCCCCCGCCGCCGCGCCTCTCCCTTCTCCGTGCAGGCCAAGATCCGCGAAATCTTCATGCCCGCACTCAGCTCGACCATGACCGAGGGCAAAATCGTCTCCTGGATCAAATCCGAGGGCGACGCCCTCTCCAAGGGCGACAGCGTCGTCGTCGTCGAATCCGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCATCCTCGCCGCCATCGTCGTCGCCGACGGCGAAACCGCCCCCGTCGGCGCCCCCATCGGCCTGCTCGTCGACTCTCCAGAAGAAATCGCCGAAGCCAAAGCCAAAGCCAAAGCCGCCAATTCCGATCCCTCTCCCGCCGCCACTCCGGCATCTCCTCCGCCTCCTCCTCCGGCCCCGGCGAAGTCGGTTTCCGACGGCCCGAAGAAGACCGTGGCCACGCCGCAGGCCAAGAAGCTCGCGAAGCAGCACAAGGTGGACATTGCAACGGTCGTCGGAACCGGTCCGTTCGGTAGGATTAGTCCGGCGGACGTGGAGGCCGCCGCCGGAATTGCGCCGTCGAAGAGCAGTTTGGCTCCGCCGGCGAGTCCTGCTCCGGCGACACCAGCTCCGCCAAAAGCTGCTTCTGCTACACCGTCACCGGCTCCAATTCCAGGTTCTAGCGTTGTTCCGTTCACTACGATGCAATCTGCGGTGGCGAAGAACATGGTGGAGAGTCTCTCTGTGCCTGCGTTCCGGGTTGGGTACCCTGTGACTACTGATGCGTTGGATGCTCTGTATGAGAAGGTGAAACCGAAGGGTGTGACTATGACCGCTATTTTGGCCAAAGCTGCTGCAATGGCACTTGTTCAGCACCCGGTTGTGAATGCCAGTTGCAAAGACGGCAAGAATTTTGTCTATAACAGTAACATCAATGTTGCTGTTGCTGTGGCAATTAATGGTGGTTTGATCACCCCTGTTCTCCAGGATGCGGATAAGTTGGACTTGTATCTGTTGTCCCAAAAATGGAAGGAGCTAGTGGACAAAGCTCGTGCAAAGCAGTTGCAACCTCATGAGTATAATTCAGGGACTTTCACACTTTCCAATTTGGGTATGTTTGGAGTTGACAGGTTTGATGCCATACTTCCACCAGGCCAGGGTGCTATCATGGCTGTTGGAGCATCGAAGCCTACTGTTCTAGCTGATGCAGATGGATTCTTCAGcgtgaaaaataaaatgctgGTGAATGTAACAGCTGATCATCGAATAATTTATGGGGCCGACTTGGCCTGCCTTCCTTCAGACTTTCTCAAAAATCATTGA	1365	0.5582	MASLPNALSFSSSLSTTATLLPCRRFTAFPRRRASPFSVQAKIREIFMPALSSTMTEGKIVSWIKSEGDALSKGDSVVVVESDKADMDVETFYDGILAAIVVADGETAPVGAPIGLLVDSPEEIAEAKAKAKAANSDPSPAATPASPPPPPPAPAKSVSDGPKKTVATPQAKKLAKQHKVDIATVVGTGPFGRISPADVEAAAGIAPSKSSLAPPASPAPATPAPPKAASATPSPAPIPGSSVVPFTTMQSAVAKNMVESLSVPAFRVGYPVTTDALDALYEKVKPKGVTMTAILAKAAAMALVQHPVVNASCKDGKNFVYNSNINVAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVDKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADADGFFSVKNKMLVNVTADHRIIYGADLACLPSDFLKNH	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g0304	454	SUPERFAMILY	CoA-dependent acyltransferases	230	444	-	-
	Ssu7g0304	454	ProSiteProfiles	Biotinyl/lipoyl domain profile.	43	118	IPR000089	-
	Ssu7g0304	454	PANTHER	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC	6	450	-	-
	Ssu7g0304	454	ProSiteProfiles	Peripheral subunit-binding (PSBD) domain profile.	166	203	IPR004167	GO:0016746
	Ssu7g0304	454	SUPERFAMILY	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	160	203	IPR036625	GO:0016746
	Ssu7g0304	454	Gene3D	-	38	142	-	-
	Ssu7g0304	454	Gene3D	-	164	203	IPR036625	GO:0016746
	Ssu7g0304	454	MobiDBLite	consensus disorder prediction	213	233	-	-
	Ssu7g0304	454	Pfam	Biotin-requiring enzyme	45	115	IPR000089	-
	Ssu7g0304	454	MobiDBLite	consensus disorder prediction	127	178	-	-
	Ssu7g0304	454	CDD	lipoyl_domain	45	117	-	-
	Ssu7g0304	454	Pfam	e3 binding domain	166	200	IPR004167	GO:0016746
	Ssu7g0304	454	Pfam	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	242	444	IPR001078	GO:0016746
	Ssu7g0304	454	SUPERFAMILY	Single hybrid motif	42	136	IPR011053	-
	Ssu7g0304	454	PANTHER	DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED	6	450	IPR045257	GO:0006086\|GO:0045254
	Ssu7g0304	454	ProSitePatterns	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	68	97	IPR003016	-
	Ssu7g0304	454	Gene3D	-	225	452	IPR023213	-
	Ssu7g0304	454	MobiDBLite	consensus disorder prediction	141	157	-	-
	Ssu7g0304	454	MobiDBLite	consensus disorder prediction	208	236	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g0304	Ssu-Chr7	4984709	4991381	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g0304	8	452	Acyl Lipid Metabolism Gene Families	AT3G25860	73.407	0.0	608

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu7g0304	7	4984709	4991381	Ssu7g0304	7	4984709	4991381	ECH