Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0302 ATGTTGCAATTACCTGAGCAAGAAGAGGAAGATCTCAACAGGATCAAAGAAGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGAACTAGCGGTTGGAAATGAAGGAAACGACAAGGATGCAGACATTCCTACTGACATCTCGGAAGCACGTGATGGTAAGAATTATGATGCTGATTATGCTGAACCATCATTTGCTGTTGGGAAATCTCCTGAAAATGTGAATGTCGCTTCTAAGAATACATCTCTTGCTGGAGGCCTGGGAGAGGGTAGTCCAAAGAGTGAGAGGTCAGATGATAAGTTTTGTGATGATATATTTGGTGAGACGCCAACGGGAGTTCGGAAATCAGGAAAAGGGGATGGTTTACTGATTGAGAGGGTTGGCCTACACGACAATTGGGACGATGCAGAGGGTTATTACAGCTATCGTATTGGTGAAATACTTGATGGCCGATATGAAGTTACTGCTGCACATGGGAGGGGTGTTTTTTCAACAGTTGTTCGGGCAAAGAATCTAAAGATGGGAAATGGTGAGCCAGAAGAAgtagcaataaaaattattcgtAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTcatattaaagaaattagtaGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCtttgtttagtttttgaatCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATATGCAAAACAGCTTTTTATTGCACTGAAGCATCTCCGGAACTGTGGTGTTCTTCACTGTGATATAAAGCCAGACAATATGTTGGTAAACGAggctaaaaatgttttgaagcTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCAGAAATAATACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGGTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGGCTTACAAACAATGACATGCTACGGCTTCACATGGAACTGAAGGGCCCTTTTCCGAAGAAGATGCTACGTAAGGGAGCATTTACTGAACAGCATTTTGATCAGGACCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGACCATAAAGCGGCTGATTCTCAACATTAAGCCAAAAGATATTGGGACACTCATCACTGGCTCTCCTGGGGAGGATCCGAAAATGTTGGCCAACTTTAAAGATCTTCTGGAAAAAGTTTTTGTCTTGGATCCAGACAAGAGGCTGACAGTTGCACAAGCTCTGAACCACCCATTCATCACGGGCAAGTGA 1440 0.4014 MLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQVELAVGNEGNDKDADIPTDISEARDGKNYDADYAEPSFAVGKSPENVNVASKNTSLAGGLGEGSPKSERSDDKFCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKMGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELYIGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKTIKRLILNIKPKDIGTLITGSPGEDPKMLANFKDLLEKVFVLDPDKRLTVAQALNHPFITGK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0302 479 MobiDBLite consensus disorder prediction 1 107 - -
Ssu7g0302 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Ssu7g0302 479 Gene3D Phosphorylase Kinase; domain 1 132 220 - -
Ssu7g0302 479 ProSiteProfiles Protein kinase domain profile. 161 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0302 479 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 479 - -
Ssu7g0302 479 SUPERFAMILY Protein kinase-like (PK-like) 148 478 IPR011009 -
Ssu7g0302 479 MobiDBLite consensus disorder prediction 44 67 - -
Ssu7g0302 479 PANTHER DUAL SPECIFICITY PROTEIN KINASE 2 479 - -
Ssu7g0302 479 Gene3D Transferase(Phosphotransferase) domain 1 221 477 - -
Ssu7g0302 479 Pfam Protein kinase domain 163 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0302 479 MobiDBLite consensus disorder prediction 80 96 - -
Ssu7g0302 479 CDD STKc_PRP4 160 476 IPR044092 GO:0004674|GO:0006468|GO:0045292
Ssu7g0302 479 MobiDBLite consensus disorder prediction 7 35 - -
Ssu7g0302 479 SMART serkin_6 161 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0302 Ssu-Chr7 4952534 4956631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0302 117 478 MAP Kinase Gene Family AT2G18170 30.239 1.38e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Ssu7g0302 Pkinase 2.7e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0302 7 4952534 4956631 Ssu7g0302 7 4952534 4956631 ECH