Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0295 ATGCAAAGCTTCAACACAACCGAATCAGAATCAAGCTCACCACTCTATTGCCATTCTTCCTTCTTTCACCGGGGAGATAACACCAGCCGAAATCCCACGCGTTTCTCGGATCTTCAACATTCTTTTCGACAACACGTTGCTGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCAAAGTCGAGCAATGTCGCTGTTGTTGCAAGCAACTTGCAGTGTGGGGCATTCAACACGAACCTTGGGTCTGCGGATTTTGCTTCAACAGTTGCAGGGTGCATTGAGACAGAGCAGCAACCCATGTTCCAGAGAGGAACCACTAACGCCACCCTCCCCGTGGGGAACCAGCATGGTGAGAATTGGGCAGATGATAGCCAACACACTGAAGATACTTGCACAGATATTGACACCGATGATAAAAACCAATGTTTCTCAACCGTGTCTTGGGGCAATAGAGTGGGGGATGGGGCACTTGTAGTTGTGGACTCCCAGGATCAAAGTAAGACTAAGGTTAAAGCTGAAGACCAGAAGACTATACGCAGGCTTGCTCAGAATCGGGAGGCTGCGAGGAAGAGTCGGCTGAGGAAAAAGGCATATGTGCAACAATTGGAGAACAGTCGAGTTAGGCTTGCACAATTAGAGCAAGAGCTTCAACGGGCACGTCAGCAGGGTGTATTTATTGCGACTGGAATCACGGGGGATCGCGGTCATTCAGTTGCTGGAAATGGTGCGTTAGCATTTGACATGGACTATGCCCGTTGGGTTGATGAGCATCAACGGCTGATCAATGACATAAGATCAGCAGTAAATTCTCAAATGGGTGACAATGAACTGCATCTTCTTGTTGATGGAGCGATGGCACATTATGATGAATTGTTTAGGTTGAAGAGCGTAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACACCTGCAGAAAGATGCTTCATATGGCTCGGTGGATTTCGTTCATCTGAACTTCTCAAGATTGTTAGAAACCAGCTTGAGCAGTTGACCGAACAGCAGTTGATGGGCATTTACAATCTGCAGCAGTCTTCCCAGCAGGCTGAGGATGCATTATCACAAGGCGTGGAAGCATTGCAGCAGTCTCTTTCAGAGACactttcctcctcctccttaGGGCCCTCTGGTTCTGGAAATGTTGCTGAGTATATGGGCCAAATGGCAATTGCATTGGGCAAGCTTGCCACACTAGAGAGTTTCCTTCATCAGGCTGACCTCTTGAGGCAACAAACCCTGCAACAGATGCGTCGAATTTTGACCACGTTCCAAGCTGCTCGTGCTCTCCTTGTGATGAATGATTACGTTTCACGACTTAGAGCTCTTAATTCATTATGGTTAGCATGCCCAAGAGAGTGCTAG 1389 0.4694 MQSFNTTESESSSPLYCHSSFFHRGDNTSRNPTRFSDLQHSFRQHVAVDLSSSSVFGAKSSNVAVVASNLQCGAFNTNLGSADFASTVAGCIETEQQPMFQRGTTNATLPVGNQHGENWADDSQHTEDTCTDIDTDDKNQCFSTVSWGNRVGDGALVVVDSQDQSKTKVKAEDQKTIRRLAQNREAARKSRLRKKAYVQQLENSRVRLAQLEQELQRARQQGVFIATGITGDRGHSVAGNGALAFDMDYARWVDEHQRLINDIRSAVNSQMGDNELHLLVDGAMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEQLTEQQLMGIYNLQQSSQQAEDALSQGVEALQQSLSETLSSSSLGPSGSGNVAEYMGQMAIALGKLATLESFLHQADLLRQQTLQQMRRILTTFQAARALLVMNDYVSRLRALNSLWLACPREC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0295 462 CDD bZIP_HBP1b-like 175 227 - -
Ssu7g0295 462 SMART brlzneu 171 242 IPR004827 GO:0003700|GO:0006355
Ssu7g0295 462 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Ssu7g0295 462 Pfam Seed dormancy control 260 334 IPR025422 GO:0006351|GO:0043565
Ssu7g0295 462 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 42 461 - -
Ssu7g0295 462 ProSiteProfiles DOG1 domain profile. 242 458 IPR025422 GO:0006351|GO:0043565
Ssu7g0295 462 PANTHER TRANSCRIPTION FACTOR TGA9 42 461 - -
Ssu7g0295 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Ssu7g0295 462 Pfam bZIP transcription factor 174 214 IPR004827 GO:0003700|GO:0006355
Ssu7g0295 462 Gene3D - 174 222 - -
Ssu7g0295 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Ssu7g0295 462 Coils Coil 194 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0295 Ssu-Chr7 4884804 4889457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0295 15 461 bZIP Transcription Factor Family AT1G68640 55.286 4.41e-156 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu7g0295 DOG1 2.1e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0295 7 4884804 4889457 Ssu7g0295 7 4884804 4889457 ECH