Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0271 ATGAGTCAGAGGGGTTTAATATATAGCTTTGTTGCCAAAGGAACTGTTGTTTTAGCAGAGCACACACAATATACGGGGAATTTCAGTACCATTGCTGTTCAGTGCCTGCAGAAGCTGCCTTCAAATAGCAGCAAATACACATACTCGTGTGATGGTCACACCTTCAACTTCCTCATAGACAATGGATTTGTTTTCCTTGTTGTTGCTGATGAATCAGTTGGAAGGAGTGTTCCTTTTATATTTCTTGAACGGGTGAAGGATGACTTTATGAAGCGCTACGGTGCTAGCATTAAAAATGACGGTGCCCATCCACTCGCTGATGACGACGAGGACGATGATTTATTTGAGGACAGATTTAGCATAGCATATCATCTTGATAGAGAATTTGGACCAACACTCAAGGAGCATATGCAGTATTGCATGAACCATCCTGAAGAAATAGGTAAACTATCAAAATTGAAGGCTCAAATAACTGAGGTCAAGGGAATAATGATGGACAATATTGAGAAGGTTTTGGATCGTGGAGAGAAGATTGAACTGCTGGTGGACAAAACAGAAAACTTGCAGTTTCAGGCTGACAGCTTCCAGAGGCAGGGCAGGCAGCTGAGAAGGAAGATGTGGCTGCAGAATCTCCAAATGAAGCTGATGGTGGGAGGAGGAATccttatcttaattataattctgTGGGTCATTGCTTGTGGGGGTTTCAAATGTTGA 717 0.4156 MSQRGLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKYTYSCDGHTFNFLIDNGFVFLVVADESVGRSVPFIFLERVKDDFMKRYGASIKNDGAHPLADDDEDDDLFEDRFSIAYHLDREFGPTLKEHMQYCMNHPEEIGKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQNLQMKLMVGGGILILIIILWVIACGGFKC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0271 238 SMART Longin_2 31 111 IPR010908 -
Ssu7g0271 238 SUPERFAMILY SNARE fusion complex 144 210 - -
Ssu7g0271 238 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 149 209 IPR042855 -
Ssu7g0271 238 Pfam Regulated-SNARE-like domain 32 97 IPR010908 -
Ssu7g0271 238 PRINTS Synaptobrevin signature 174 193 IPR001388 GO:0016021|GO:0016192
Ssu7g0271 238 PRINTS Synaptobrevin signature 154 173 IPR001388 GO:0016021|GO:0016192
Ssu7g0271 238 PRINTS Synaptobrevin signature 210 229 IPR001388 GO:0016021|GO:0016192
Ssu7g0271 238 SUPERFAMILY SNARE-like 6 140 IPR011012 -
Ssu7g0271 238 Gene3D - 146 233 - -
Ssu7g0271 238 ProSiteProfiles Longin domain profile. 6 133 IPR010908 -
Ssu7g0271 238 CDD R-SNARE 149 207 - -
Ssu7g0271 238 Pfam Synaptobrevin 149 234 IPR042855 -
Ssu7g0271 238 ProSitePatterns Synaptobrevin signature. 167 186 IPR001388 GO:0016021|GO:0016192
Ssu7g0271 238 CDD Longin 7 140 IPR010908 -
Ssu7g0271 238 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 727 1 238 - -
Ssu7g0271 238 Gene3D Longin domain 1 145 - -
Ssu7g0271 238 PANTHER SNARE PROTEINS 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0271 Ssu-Chr7 4458923 4465301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0271 1 238 Miscellaneous Gene Families AT3G54300 87.395 3.31e-156 431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0271 7 4458923 4465301 Ssu7g0271 7 4458923 4465301 ECH