Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2335 ATGCCAAATCAAAACCCCATTTTGCACTGCACTTTCCTCTTGTTACTCTTGCATGTTCTACTCAATGCAGCTCTTATGAGTTGCAAATCCACCATAGAGCCATGCTCCAACAATGACTCATGCAATGTTTTTCTTGGCTACACCCTTTACACTGACCTCAAGGTCTCTCAAGTTGCTTCTCTCTTCCAAATAGACCTCATTGCACTTCTCACTGCCAATGCCATTGACATCTCTTCCACTGATGTAGAGCACCACATTCTCCCTTCCAAGCTTTTTCTCAAGGTCCCTATCACATGTTCTTGTGTTGATGGGATTAGAAAATCAGTGTCCACCCATTACAGGACTCGCCCTTCTGATACTCTTTCTTCCATTGCAGATTCAATATATGGGGGTTTGGTGTCCCCTGATCAGCTTAAGGAGGCCAATTCCATAGTTGATCCTTCAGTGCTTGATGTTGGCCTGAACCTTGAGGTGCCACTTCCATGCACTTGCTTTAATGGGAGTGATAATTCTTTGCCTTCAATTTACCTCTCCTATGTGGTTCAGCCAATTGATACTTTGGCTGCAATTGCAACTAGATATTTCACCACTCTTACTGATTTGATGAATGTCAATGACATGGGGACTACAGCTATCTCTGATGGTGATATTCTTGCTGTTCTAATACCTGCTTGTGCATCAAATTTTCCAGAACATGCCTCTGATTTTGGTTTGCTTGTCCCTAATGGAAGCTATGCCATTACAGCTAGTCACTGTGTGAAGTGTAGTTGTGAACCACGAAATTTTAATTTATATTGTATGCCAGCTTCTCTATTGGTCTCTTGTTCCAGCATGCAATGCAAAAACAACAATCTTATGCTTGGGAATGCTACTGTGCAACAGAGTAGTTCTGGTTGCAATGTTGTCCCAATCTCTACAGCCTCGTTGTCCAGTCTTGATGATTTTTCCTACGTGCTATCTCATGACAAGCTTACTGTATATGAACCAAACCTCTTGGGTTTAGTTGCAAAAGCAAGGGGAATCGGTATTTGCTTCGTCGCCATCCCCATCGCCATCACTGTCACCTCAATCAGAAGGAACTGGTCTAACAGCACCCAAATCTTTAGCCGCACCTGCAACTGGGATCGTTTCAGGGATTCTCATATGCAAATGGCCCTATTAGTAGGATTGCTTCTAGTGCTTCTACTTGCTCCCTCCTTGGTGAATCCATTGCCTGTTTTGACGTTTGCATTTATGTTATTGCTTGTAAAGTTGATGATCCTTGTGGCTTTGTAA 1275 0.429 MPNQNPILHCTFLLLLLHVLLNAALMSCKSTIEPCSNNDSCNVFLGYTLYTDLKVSQVASLFQIDLIALLTANAIDISSTDVEHHILPSKLFLKVPITCSCVDGIRKSVSTHYRTRPSDTLSSIADSIYGGLVSPDQLKEANSIVDPSVLDVGLNLEVPLPCTCFNGSDNSLPSIYLSYVVQPIDTLAAIATRYFTTLTDLMNVNDMGTTAISDGDILAVLIPACASNFPEHASDFGLLVPNGSYAITASHCVKCSCEPRNFNLYCMPASLLVSCSSMQCKNNNLMLGNATVQQSSSGCNVVPISTASLSSLDDFSYVLSHDKLTVYEPNLLGLVAKARGIGICFVAIPIAITVTSIRRNWSNSTQIFSRTCNWDRFRDSHMQMALLVGLLLVLLLAPSLVNPLPVLTFAFMLLLVKLMILVAL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2335 424 CDD LysM 178 220 IPR018392 -
Ssu6g2335 424 Pfam LysM domain 179 212 IPR018392 -
Ssu6g2335 424 Pfam LysM domain 113 159 IPR018392 -
Ssu6g2335 424 SMART LysM_2 112 159 IPR018392 -
Ssu6g2335 424 SMART LysM_2 178 221 IPR018392 -
Ssu6g2335 424 Gene3D LysM domain 168 229 IPR036779 -
Ssu6g2335 424 SUPERFAMILY LysM domain 177 220 IPR036779 -
Ssu6g2335 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 304 - -
Ssu6g2335 424 Gene3D LysM domain 107 167 IPR036779 -
Ssu6g2335 424 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Ssu6g2335 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 15 304 - -
Ssu6g2335 424 CDD LysM 111 158 IPR018392 -
Ssu6g2335 424 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2335 Ssu-Chr6 53103291 53106048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2335 13 301 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.890 1.50e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2335 - - pvu:PHAVU_008G163700g 505.753