Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1929 ATGCCGTCGTCGAATTCCGGCGAGAGCCGCCGAGCGACCAAGCCCCAGAGCTCCGCCGGAGCACCCCCGCCGCCGGAGCAAGAGAACCTCCCCTGCCCCCGCTGCGACTCCACTAACACCAAGTTCTGCTACTACAACAACTACAATTTCTCCCAGCCGCGTCACTTCTGCAAATCGTGCCGCCGGTACTGGACCCACGGCGGCACCCTTCGCGACATCCCCGTCGGCGGCGGCAGCCGGAAAAACGCCAAGCGCTCCCGCACCCACCACACTGCCACGTCATCCTCCTCCTCCACGATGACGTCAGCGCAGCAGGAGCACGCCTTGTCCGCGGCATTGGCACCTGTTTCCACGACCCAAGGAGGGTCCATGCCGTTTGTTGACGGTGACGTCAAACAGAATAACGTTAACGTTTGCGGGAGCTTCACTTCGCTGCTGAACAACACCCAGGGGTCTGGGTTTCTGGCCCTGGGTGGGTTTGGGCTTGGGCTTGGACACGGGTTCGAGGACATGGGCTTCGGAATTGGGCGGTCGGGTTGGGCCTTCCCCGGAATAGTGGACAGCGGTAACATTGGCGGCGCCGTTGCGGGTTCTGGCGTCGGGAACGCGTGGCAGTTAGATGGGGGCGAGGGTGGGTTTGTTAGTGGAGACTGCTTCTCTTGGCCTGGACTTGCGATTTCAACACCGGGAAATGGTGTCAAATGA 705 0.6184 MPSSNSGESRRATKPQSSAGAPPPPEQENLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHTATSSSSSTMTSAQQEHALSAALAPVSTTQGGSMPFVDGDVKQNNVNVCGSFTSLLNNTQGSGFLALGGFGLGLGHGFEDMGFGIGRSGWAFPGIVDSGNIGGAVAGSGVGNAWQLDGGEGGFVSGDCFSWPGLAISTPGNGVK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1929 234 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 231 - -
Ssu6g1929 234 MobiDBLite consensus disorder prediction 89 109 - -
Ssu6g1929 234 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Ssu6g1929 234 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 231 IPR045174 GO:0003700|GO:0006355
Ssu6g1929 234 MobiDBLite consensus disorder prediction 1 16 - -
Ssu6g1929 234 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g1929 234 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Ssu6g1929 234 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Ssu6g1929 234 MobiDBLite consensus disorder prediction 71 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1929 Ssu-Chr6 34617460 34618164 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1929 1 234 C2C2-Dof Transcription Factor Family AT3G50410 49.407 7.18e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu6g1929 zf-Dof 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1929 - - gmx:778095 337.421