Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1924 ATGATCCAAGAACTGTTGGGTGGTGCTAGCCTCATAGCAGGAGAAAGAAAACCCTCCATTAATGGAGGAGGAGGAGTTCTACTCCCAACCACACCATCTCCCTCTTCTCTTCCCTCTTCCACAACCAATAATGTTACCCTCACAACCCCAACAACAAACGCTGCTGCCACTGCCACGTCATCAACTTCGGAAAACCAAAACCTGAGGTGCCCGCGATGCGATTCATCGAACACCAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGCTACTGGACCAAAGGCGGCGCTCTCCGGAACGTTCCCATAGGCGGCGGCTGCCGGAAAAACAAGAGCATCGGCGTGTCGAACTCGGTGGCGAAGACAACCTCAACCAAGATGAAAACCGTTGCATCTGAGCTTGGAAAATCACCAGGGTTCGGTGGGTTCGAAGTTGAACACGAACTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCACAAAACACTCACCTTCTGGCTTTGCTCAGAGCCACACAAAATCCAAGCCCTAACCCTAACCCTAGTCCCATGTCCCTTAACGAAGAAGGGAACCTAATGGGCCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGCTGCTGAATCACCGAACCTTAGGCTATGATGCGGTCGCGCAAGTTCCTTCGCTTGGTCTATGCAGCACTTTTGGGAGAAACAATCAAGATCATGGGGGGTTCCTACTTGGGGAACATCACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCATCATCGGTTAATAATTATTGCAGTGACAACTCGTCGCAAGTGTTTATGGGGAACATGGCTTCTAACTATTCCTCTTCTATGTCCAACAACATTTTGGAGACAACTTCGGTTGCTGGGGGTGAATTCGGATACTGGAATAACGGTCCAACCTTTTCGTGGTCTGATCTTCCAACCACGAATGGCGCTGGTGCATATCCGTAA 1008 0.504 MIQELLGGASLIAGERKPSINGGGGVLLPTTPSPSSLPSSTTNNVTLTTPTTNAAATATSSTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGVSNSVAKTTSTKMKTVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNPSPNPNPSPMSLNEEGNLMGHMVSTEPLVSNALLNHRTLGYDAVAQVPSLGLCSTFGRNNQDHGGFLLGEHHNSGIQELYQKLRSSSVNNYCSDNSSQVFMGNMASNYSSSMSNNILETTSVAGGEFGYWNNGPTFSWSDLPTTNGAGAYP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1924 335 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Ssu6g1924 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 331 IPR045174 GO:0003700|GO:0006355
Ssu6g1924 335 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 20 331 - -
Ssu6g1924 335 MobiDBLite consensus disorder prediction 26 69 - -
Ssu6g1924 335 MobiDBLite consensus disorder prediction 20 69 - -
Ssu6g1924 335 Pfam Dof domain, zinc finger 66 122 IPR003851 GO:0003677|GO:0006355
Ssu6g1924 335 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1924 Ssu-Chr6 34384615 34385622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1924 68 160 C2C2-Dof Transcription Factor Family AT1G07640 59.140 8.63e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu6g1924 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1924 - - vra:106766838 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2450 2 82864705 82865691 Ssu6g1924 6 34384615 34385622 PCT