Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1845 ATGGCTCTCAGCGACGATGCGCCGCACCACTCTCCCTCGTTACTCGATGCCCTTCTCTGCGAAGAGCGAGACACCTTCGAGGAAGATTTCGATGGGGGTGAGATCGATAACGGTGACCCATCTGCCAGAAAGTCGCAGTCTTCGCCTTTGGTTTTGCTCGACAATGACCTGTTCTGGGAGGATGAAGAGCTTGTTTCCTTAATCTCGAAAGAGGGAGAGACCCATTTGTGTTCTCTCAGTGTCATTGCTGATGGGCCCTTAGAAGGGCCTCGTGTGGAGGCTGTGAACTGGATTTCCAAAGTCTGTGGACACTATGGGTTCTCTGCTTTGACCATTGTTCTTGCTGTTAACTACTTTGATAGGTTCATCACAAGTTTGAGGTTTCAGAGGGACAAGCCTTGGATGACACAGCTCACTGCTGTTGCTTGTTTGTCCCTTGCTGCAAAAACGGAAGAGACCCATGTGCCACTTCTTTTGGACCTTCAAgtgGAGGAGTCAAGGTTTGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGTTGTCAACTCTTAAATGGAGGATGCATCCGGTGACCCCGATTTCTTTCTTTGAACACATTGTGAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAGTTCCTATGGCGTTGTGAGCGAGTTCTTCTCAATGTCATTGCGGATTCAAGGGTTATGAGTTATCTTCCTTCTACGTTGGCTGCTGCTACAATGATCCATGTTATTAAAGAGATTGAACCGTTCAATGCAACTGAGTACATCGATCAGCTTCTGGGTTTACTGAAGATTGGTGAGGAACAAGTGAACCAGTGCTACAAAATTATTCAGAAACTATTAGGTTGCTATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGTCTATCTGAACCAGGTAGCCCGGGTGGTGTCATTGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGGCCGTGTCATCATCAGCCTCACTGTCACTGGAGCCGCTGTTTAAGAGGAGCAGAGCTCAGGACCAGCAAATGCGATTGCCTTCTGTTAATCGTGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1104 0.4692 MALSDDAPHHSPSLLDALLCEERDTFEEDFDGGEIDNGDPSARKSQSSPLVLLDNDLFWEDEELVSLISKEGETHLCSLSVIADGPLEGPRVEAVNWISKVCGHYGFSALTIVLAVNYFDRFITSLRFQRDKPWMTQLTAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVIADSRVMSYLPSTLAAATMIHVIKEIEPFNATEYIDQLLGLLKIGEEQVNQCYKIIQKLLGCYEGIYSLHQKRKRLSEPGSPGGVIDASFSCDSSNDSWAVSSSASLSLEPLFKRSRAQDQQMRLPSVNRVSIDVLNSPR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1845 367 ProSitePatterns Cyclins signature. 91 122 IPR006671 -
Ssu6g1845 367 PANTHER CYCLIN-D3-2 11 351 - -
Ssu6g1845 367 Pfam Cyclin, C-terminal domain 193 289 IPR004367 -
Ssu6g1845 367 Pfam Cyclin, N-terminal domain 91 190 IPR006671 -
Ssu6g1845 367 SUPERFAMILY Cyclin-like 194 293 IPR036915 -
Ssu6g1845 367 SMART Cyclin_C_2 193 321 IPR004367 -
Ssu6g1845 367 SMART cyclin_7 96 184 IPR013763 -
Ssu6g1845 367 CDD CYCLIN 91 183 IPR013763 -
Ssu6g1845 367 Gene3D - 91 191 - -
Ssu6g1845 367 PANTHER CYCLINS 11 351 IPR039361 -
Ssu6g1845 367 Gene3D - 192 281 - -
Ssu6g1845 367 SUPERFAMILY Cyclin-like 59 191 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1845 Ssu-Chr6 31899085 31900533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1845 14 357 Core Cell Cycle Gene Families AT5G67260 52.809 2.19e-113 334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1845 6 31899085 31900533 Ssu2g2528 2 84220348 84221597 PCT