Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1253 ATGCACGAAAATAGAGACCCTGCGATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCAGAAGATGttgacaaaaaagaagaagagggtggtgatggaggagaaCAAGAGACAGAAGAAGATAAAGACGAAGGAGACAAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGAACTAGAAGCTGATCCTCCTCCAAATGCTGAAGAGACTAAGAATTCAGGCACATCCCCTGAGGCTGTTGTGAACCCCAAAACACCCTCCATAAAAGAAGAAACTGCAAAATCAAAAGGTGACAAATCAGAGAAGGAACAAGGCGATGCAGCCAACTCACAAGACAAAACCCTGAAGAAGCCAGATAAAGTGCTACCATGCCCCCGCTGCAATAGCATGGACACTAAATTCTGCTACTACAACAACTACAATATCAACCAGCCACGTTATTTCTGCAAAGCCTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGACGACGAAAGAACAAGAACTCTACCTCACAATATCGCCACATTACTATCTCTGAGGCCCTTCAAGCAACTAGAATTGATGCTCCAAATGGAACTCATCTTCCAACTTTGAAAAGCAATGGTAGAGTCCTCAGCTTTGGATTGGATGCACCAATTTGTGATTCCATGGCATCTGTCCTCAATCTTGAAGAGAAAAAGGCCCTTAATGGCACAAGAAATGGGTTTCATCATGGCTTTGAGGATCATAGACTCCCTGTTCCTTGCAAAAGTGGGGGAAAAGGTGATGACTCTTCAGCTACATCTTCCATTACAGTTTCAAGTTCCATGGCAGAAAGTAGCAAAAGCACCTTCCAACAACCAGTGCTCCAAAATCATGGTTTCCTTCCTCAACTTCCATGCATTCCTGGTGTTCCTTGGCCCTATACATGGAATTCTCCAATTCGCTCACCTGCTTTGTGTCCTTCAGGATTTCCCCTACCATTCTATCCTGCTACTTTTTGGAACTGTGCCATGCCAGGGAATTGGAATGTTCCATGGTTTTCCTCACATTCATCTGCTTCAAACCCAAATTCTCCAAGCTCAGGTCCTAATTCTCCAACTTTGGGGAAGCATTCACGTGACGGTGACATGATTAAGCAAGACACTTTGCACAAAGAAGAAGCTCCAAAGCCGAGAAACGGGTCTGTTTTGGTTCCCAAAACGTTGAGAATTGATGATCCAAGTGAAGCAGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTGAGTGGGGGAGGTATGTTTAAGGCCTTCCAACCAAAGAAGGACGAGAAGAATCGTGTTGAAGCCTCTCCAGTGTTGATGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAGCTCTTGA 1410 0.4383 MHENRDPAIRLFGQKIPFPEDVDKKEEEGGDGGEQETEEDKDEGDKDAGVENVTEEELEADPPPNAEETKNSGTSPEAVVNPKTPSIKEETAKSKGDKSEKEQGDAANSQDKTLKKPDKVLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSQYRHITISEALQATRIDAPNGTHLPTLKSNGRVLSFGLDAPICDSMASVLNLEEKKALNGTRNGFHHGFEDHRLPVPCKSGGKGDDSSATSSITVSSSMAESSKSTFQQPVLQNHGFLPQLPCIPGVPWPYTWNSPIRSPALCPSGFPLPFYPATFWNCAMPGNWNVPWFSSHSSASNPNSPSSGPNSPTLGKHSRDGDMIKQDTLHKEEAPKPRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGGMFKAFQPKKDEKNRVEASPVLMANPAALSRSLNFHESS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1253 469 MobiDBLite consensus disorder prediction 1 121 - -
Ssu6g1253 469 MobiDBLite consensus disorder prediction 88 119 - -
Ssu6g1253 469 MobiDBLite consensus disorder prediction 383 402 - -
Ssu6g1253 469 MobiDBLite consensus disorder prediction 17 31 - -
Ssu6g1253 469 MobiDBLite consensus disorder prediction 254 275 - -
Ssu6g1253 469 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Ssu6g1253 469 MobiDBLite consensus disorder prediction 67 81 - -
Ssu6g1253 469 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Ssu6g1253 469 PANTHER CYCLIC DOF FACTOR 2 1 468 IPR045174 GO:0003700|GO:0006355
Ssu6g1253 469 MobiDBLite consensus disorder prediction 351 376 - -
Ssu6g1253 469 PANTHER CYCLIC DOF FACTOR 1 1 468 - -
Ssu6g1253 469 MobiDBLite consensus disorder prediction 351 369 - -
Ssu6g1253 469 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1253 Ssu-Chr6 20363819 20366571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1253 1 467 C2C2-Dof Transcription Factor Family AT3G47500 49.170 7.63e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu6g1253 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1253 - - gmx:778113 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2100 1 59841820 59844407 Ssu6g1253 6 20363819 20366571 ECH
Ssu2g1585 2 63635298 63638680 Ssu6g1253 6 20363819 20366571 ECH
Ssu6g1253 6 20363819 20366571 Ssu6g1253 6 20363819 20366571 ECH
Ssu2g1585 2 63635298 63638680 Ssu6g1253 6 20363819 20366571 PCT