Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1248 ATGAAGACAACTAGGAAGGAGGAGAGTGGAAAGAAAGTCTCACTCTCACTCTCACCCTCGGATTTGGACAGCAAATGTGCCTTCACTCTCACTTTGATGCGTTTGATGGGCTTCTTCGTCACTTCTTTAGTCCTTTGCTCTGTAATTTTCTCACTCTCCGTTGTTCTTCGAGACCCTCCCTCAGATGCCGCCCTGCGCGAACCATTATTATCATCCGCACCTGTCTTTCAAATGTCACAAACCCAACAAGATTTGGACAATGATACCTCTGATTCTGTTGAGTTGCAAGAAGATAAACTGCTTGGTGGCCTTCTAGCTGCTGGATTTGATGAAAGATCTTGTCTAAGCAGGTATCAGTCAGCCATGTATCACAAAGGACTATCAGGAAAGCCTTCTTCTTACCTCATTTCTAGATTAAGAAAATATGAGGTTCAACACAAAGAATGCGGACCTTATACTGAATCCTATAACAGAACAGTGGAAGAACTCAGGTCTGGTCAATTTACTGAGTCCTCAGCTTGTAAATATGTTGTATTGATTTCATTTAGTGGGTTAGGGAATAGGATATTGACCCTAGCATCTGCATTTCTTTATGCTCTCCTCACAAACCGTGTTCTATTGGTTGACCCTGGAGTGGATATGATTGATCTCTTTTGTGAGCCATTTCCAGATGCTTCCTGGTTTCTCCCCGCTGATTTTCCTCTTAACgctcaatttaataatttcagtcAGAAATCTGATCAATGTTATGGGAAAATGCTGAAAAATAAATCAGTTACAAATTCCACTGTTCCATCTTTTGTCTACCTTCATCTAGTCCATGattatgatgataatgataagcTTTTCTTCTGTGATGAAGAGCAACATTTTCTCCAGAAAGTACCTTGGTTAATGATGAAAACAGATAATTACTTTATCCCATCTCTATTCTTAATGCCATCTTTTGAGCAGGAACTGAGTGATCTCTTCCCAAATAAGGAAACAGTTTTCCATTTCTTGGGTAGATATCTGTTCCACCCCTCAAACAGTGTGTGGGGACTTGTTGTCAGATACTATCAAGCTTATTTAGCTAAAGTTGATGAAAGAATGGGCATACAAATTAGAGTGTTTGACACGGAACCTGGTCCATTTCAACATGTATTGGATCAGATCTTAGCTTGTACTTTGAAGAAGAATCTTTTGCCTGATGTTAACCACCAGCAGGATACTATCAATTCCTCAGGAATTCCCAAGTCAAAAGCGATATTGATGACATCCTTAAGCTCTGGTTATTTTGAAAAGGTAAGAGACATGTATTGGGAATATCCAACAGTGACTGGAGAAGTGGTTGGCATTTACCAGCCGAGTCATGAAGGATATCAACAAACACAGAAGCAGATGCACAACCAAAAAGCTTGGGCGGAAATGTATCTCTTAAGCTTAACTGATGTGTTGGTTACTAGCGCATGGTCTACTTTTGGCTACGTGGCTCAGGGGCTTGGAGGTTTAAAACCATGGATTCTGTACAAACCTGAGAATCGAACTGCCCCAGATCCTCCCTGTCGACGTGCCATGTCAATGGAGCCATGTTTCCATGCTCCTCCCTTTTATGACTGCAAGGCCAAGAGAGGAACTGACACAGGTGAACTTGTTCCATATGTAAGACACTGTGAGGATATGAACTGGGGCCTTAAGCTTGTAGACAGTTATAGTTATTAG 1701 0.4051 MKTTRKEESGKKVSLSLSPSDLDSKCAFTLTLMRLMGFFVTSLVLCSVIFSLSVVLRDPPSDAALREPLLSSAPVFQMSQTQQDLDNDTSDSVELQEDKLLGGLLAAGFDERSCLSRYQSAMYHKGLSGKPSSYLISRLRKYEVQHKECGPYTESYNRTVEELRSGQFTESSACKYVVLISFSGLGNRILTLASAFLYALLTNRVLLVDPGVDMIDLFCEPFPDASWFLPADFPLNAQFNNFSQKSDQCYGKMLKNKSVTNSTVPSFVYLHLVHDYDDNDKLFFCDEEQHFLQKVPWLMMKTDNYFIPSLFLMPSFEQELSDLFPNKETVFHFLGRYLFHPSNSVWGLVVRYYQAYLAKVDERMGIQIRVFDTEPGPFQHVLDQILACTLKKNLLPDVNHQQDTINSSGIPKSKAILMTSLSSGYFEKVRDMYWEYPTVTGEVVGIYQPSHEGYQQTQKQMHNQKAWAEMYLLSLTDVLVTSAWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKRGTDTGELVPYVRHCEDMNWGLKLVDSYSY 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1248 566 Pfam Xyloglucan fucosyltransferase 74 534 IPR004938 GO:0008107|GO:0016020|GO:0042546
Ssu6g1248 566 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE-LIKE PROTEIN 1 565 - -
Ssu6g1248 566 PANTHER FUCOSYLTRANSFERASE 2-RELATED 1 565 IPR004938 GO:0008107|GO:0016020|GO:0042546
Ssu6g1248 566 Gene3D - 171 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1248 Ssu-Chr6 20278623 20280843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1248 33 561 Xyloglucan Fucosyltransferase1 AT2G03220 61.538 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1248 K13681 - gmx:100803305 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1248 6 20278623 20280843 Ssu6g1248 6 20278623 20280843 ECH