Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1162 ATGCAGGAAATACAGTCCATCGGAGGAGCCAGGTTTTTCTCCGGCACCGGCGGCGGAGACAGAAGGCTTCGACCCCACCACCAGAACCACCAGGCCTTAAAGTGCCCCCGCTGCGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGTTGCCGCAAGTCCAAACGCTCCGCCAAGCCCAACAAAACCGAACCCGGCCCCCCGCCGGACCCCGACCCCGACCACAACTCCAACTCTCACTCCAGCAGCGAGAGCTCCAGCCTCACCGCCACCGCCGCCGTGTCGGCTCCGTTGAACTCCGattccaacaacaacaaccacaacgtGCACGAGTCCAAGTTGTTGATCCCTGTGGACCCTTCGAACTCCGTTTTGGAGACGAATCCTCTGGAGCAAGGAGCAGGGGACTGCGGTGGTATTTTCTCCGAGATTGGGCCTTTCACGAGTTTGATCACTACTACTTCCACTAACGAGGCATTGGCGTTTGGGTTCGGTAACGGAATCCCCGATGCGTCGTCGTTTCAGTGGCAGCACCAGAAGGTTACGAGCATCACTGGCGACGAGCATCATCCTCATGAGGACCAATTGAAGTTGCCCGACAGTTCCTTGCTCGATCACACCGTTGATTTGTCGGCGATTCATGGCAAACCCGGCTTCCACGGAGGATTTGGGTCGTTGGATTGGCACGGCGGTGCGGATCCAGATTTGTTTGATCTTCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTTCATCTTCCCTGA 891 0.5623 MQEIQSIGGARFFSGTGGGDRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSAKPNKTEPGPPPDPDPDHNSNSHSSSESSSLTATAAVSAPLNSDSNNNNHNVHESKLLIPVDPSNSVLETNPLEQGAGDCGGIFSEIGPFTSLITTTSTNEALAFGFGNGIPDASSFQWQHQKVTSITGDEHHPHEDQLKLPDSSLLDHTVDLSAIHGKPGFHGGFGSLDWHGGADPDLFDLPNTVDHAYWSHTHWSDHDNSSLFHLP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1162 296 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677|GO:0006355
Ssu6g1162 296 MobiDBLite consensus disorder prediction 106 139 - -
Ssu6g1162 296 MobiDBLite consensus disorder prediction 1 30 - -
Ssu6g1162 296 MobiDBLite consensus disorder prediction 78 139 - -
Ssu6g1162 296 Pfam Dof domain, zinc finger 31 87 IPR003851 GO:0003677|GO:0006355
Ssu6g1162 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 287 IPR045174 GO:0003700|GO:0006355
Ssu6g1162 296 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677|GO:0006355
Ssu6g1162 296 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 8 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1162 Ssu-Chr6 18995074 18995964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1162 20 293 C2C2-Dof Transcription Factor Family AT5G60850 41.695 4.24e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu6g1162 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1162 - - pvu:PHAVU_003G182100g 409.068