Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3501 ATGGGAGATACACCAAAGTCGCTCATGGATGACCTACTCGGCCTTTTAAGGATTCACATCAAGCGCGGTGTCAACCTCGCCGTTCGCGATGTCAATACTAGCGATCCATACGTCGTCGTTAGGATGGGCAAGCAGAAGCTCAAGACTCGTGTGATTAAAAAGGATATTAATCCCGAGTGGAATGAAGATCTTACGCTTTCTGTTACAGATCCCATTCGTCCATTTATACTgACTGTGTATGACTATGACACTTTCAGCATGGATGACAAAATGGGAGATGCAGAATTTGACATCTCGCCATTTGTAGAAGCCTTAAAGGTGAACTTAGAAGACCTCCCCAGTGGTAATATAATCACAAGAATACAACCAAGCAGGCAAAACTGCCTGGCGGAGGAAAGTTGCATCGTTTATGACAATGGCAAAGTTATCCAAGATGTTGTCCTTAGATTGCGAAATGTGGAATGCGGTGAAGTGGAAATCCAATTGGAATGGATTGATCTTCCTGGCTCCAGGggtttataa 522 0.4349 MGDTPKSLMDDLLGLLRIHIKRGVNLAVRDVNTSDPYVVVRMGKQKLKTRVIKKDINPEWNEDLTLSVTDPIRPFILTVYDYDTFSMDDKMGDAEFDISPFVEALKVNLEDLPSGNIITRIQPSRQNCLAEESCIVYDNGKVIQDVVLRLRNVECGEVEIQLEWIDLPGSRGL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3501 173 CDD C2_ArfGAP 13 156 - -
Ssu5g3501 173 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Ssu5g3501 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 5 171 - -
Ssu5g3501 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 165 IPR035892 -
Ssu5g3501 173 Pfam C2 domain 14 100 IPR000008 -
Ssu5g3501 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 171 IPR044562 -
Ssu5g3501 173 Gene3D C2 domain 10 171 IPR035892 -
Ssu5g3501 173 SMART C2_3c 15 110 IPR000008 -
Ssu5g3501 173 PRINTS C2 domain signature 54 67 IPR000008 -
Ssu5g3501 173 PRINTS C2 domain signature 30 42 IPR000008 -
Ssu5g3501 173 PRINTS C2 domain signature 75 83 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3501 Ssu-Chr5 85905698 85906610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3501 46 173 C2H2 Transcription Factor Family AT1G70790 59.231 1.51e-51 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1223 2 53667141 53671453 Ssu5g3501 5 85905698 85906610 ECH
Ssu5g3501 5 85905698 85906610 Ssu5g3501 5 85905698 85906610 ECH