Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3381 ATGAGAACCCAACGGCCTCACCGCCTCCTCCTCTCCCTCGTCCTCCTCGCAGCCGCATTCTCACCCCTCCACCCGACGTCCGCCGCCGCAGACGACGGCGGCGACGCCGACTTCATCCGCACGAGCTGCAACACCACGCTCTACCCGGACGTGTGCTTCACCTCCCTCTCCCGCTACGCCAATGCGGTGCAGCAGAGCCCCGGCCAGCTGGCGCGCGTGGCCATCGCCGTGAGCCTCTCCAGGGCCCACCACGCCGCCTCCTACGTCTCCAACCTCACGCGCGAGGCCGACTACGGCGGCCGCAGGCGCGCCGCGCTCGCGCTGCACGACTGCTTCTCGAACCTCGGCGACGCCGTCAACGAAATCCGCGGCTCGCTGAAGCAGATGCGCCAGATTGGGGCCGCCGGCAGCGGCGCCGGCTCGTTCCTGTTCCAGATGAGCAACGTGCAGACGTGGATGAGCGCCGCGCTCACCGACGAGGAGACCTGTACGGACGGATTCCAGGACGTAGCGGACTGCCCCGTGAAAACGGATGTATGCGATCGCGTCAACAGCATCAAGAAGTTCACCAGCAATGCCTTGGCCCTCGTCAATTCCTACGCCAACAAGGGAATGCCTTGA 621 0.6651 MRTQRPHRLLLSLVLLAAAFSPLHPTSAAADDGGDADFIRTSCNTTLYPDVCFTSLSRYANAVQQSPGQLARVAIAVSLSRAHHAASYVSNLTREADYGGRRRAALALHDCFSNLGDAVNEIRGSLKQMRQIGAAGSGAGSFLFQMSNVQTWMSAALTDEETCTDGFQDVADCPVKTDVCDRVNSIKKFTSNALALVNSYANKGMP 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3381 206 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 203 - -
Ssu5g3381 206 Pfam Plant invertase/pectin methylesterase inhibitor 37 196 IPR006501 GO:0004857
Ssu5g3381 206 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 8 203 - -
Ssu5g3381 206 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 200 IPR006501 GO:0004857
Ssu5g3381 206 SMART PMEI_2 34 196 IPR006501 GO:0004857
Ssu5g3381 206 CDD PMEI-like_3 41 202 - -
Ssu5g3381 206 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 200 IPR035513 -
Ssu5g3381 206 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 200 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3381 Ssu-Chr5 83961293 83961913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3381 39 199 Carbohydrate Esterase AT3G14310 23.457 6.89e-12 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3381 5 83961293 83961913 Ssu5g3381 5 83961293 83961913 ECH