Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3379 atgGACAAACTCTTTCTCAACTGTTTCATTTTATACTGTCTTCTTTATTCTCTCTTGGCTGTGCATGGCAAACAATTGTCATGCAATGAAACCCCCTACCCCCGTGTGTGCATGCATTACATTGACACTACCAACACATTATCAACCCTAGATGCTTCATCTTCTTCCTTCCATGACGTGGCCCTTAAGGTCACCATGGAGCAAGCCATTGAGGCTCATAAACTTGTCTCGAACATGGACTTGAATAATTTCAAGGACAAGCGAGCCAAGTCTGCATGGGAAGATTGTTTAGAGCTCTATGAGAACACTCTTTATCAGCTCAAACGCTCAGTGAACTCAAACAATCTAAATGACAGGTTGACTTGGCAAAGTGCATCCATTGCCAACCATCAAACATGCCAAAATGGTTTCACTGAATCCAACCTTCCCTATCACCTAAACTACTTCCCCTCCATGTTAAGCAACTTCTCCAAATTGCTTAGCAATTCCTTGTCCATTAGCAAGGCTATGACTTTGACATCATCATCACTGTCATCATCATCGATCAAACAAAGTGGTGGGCGAAGGTTGCGTTCAGATGGTTTCCCTTATTGGCTGTCACATTCAGATAGAAGGCTTCTTCAGGAATCAGAACCAAAAGCTGATGTTGTGGTGGCACAGGACGGGAGTGGGAACTATAAGACCATCTCAGAGGGTGTGGCTGCAGCTGCTAAACTCAGTGGAAAAGGGCGTGTTGTTGTGCACATCAAAGCTGGTGTTTACAAAGAGAGTATTGATATCCGAAGGACAGTGAAGAACTTAATGATCATTGGAGATGGAATGGGTGCTACTATTGTTACTGGTAATGATAACGTACAAGATGGTTCCACTACTTTTCGGTCTGCTACTTTTGCGGTTTCCGGTGACGGCTTCATCGCTCGGGACATGACCTTCGAGAACACGGCCGGACCGCAAAAGCACCAAGCAGTGGCTCTCCGTTCCGGCGCCGACCGCTCGGTGTTCTACCGGTGCAGCTTTAAGGGGTACCAAGACACGTTGTACGTCTACGCCAACCGCCAATTCTACCGTGACTGTGACATATACGGAACCGTAGACTTCATTTTCGGGGACGCCGTGACGGTACTTCAGAACTGCAACATCTACGTGAGGAAACCGATGAGCAACCAGCAGAACACGGTGACGGCTCAAGCGAGAACCGACCCTAACGAGAACACGGGCATCATCATCCATAACTGTCGCATCACTGCAGCTGGGGACCTGAAAGCGGTGCAGGGCTCTTTCAGAACCTATCTAGGTCGCCCGTGGCAAAAGTACTCACGGACGGTGGTGATGAAGAGTGCTCTTGATGGCTTGATTAACCCTGCAGGTTGGTCTCCGTGGGCTGGAAACTTTGCTCTGAGCACCCTCTATTACGCTGAGCATGCGAACACAGGAGGTGGTGCTGCCACAGGAGGGAGGGTGAAATGGCCAGGGTTTCGTGTGATCACCAGTTCCGAGGCTGTGAAATTCACCGTTGGGGATTTCTTGGCCGGGGACTCGTGGATTCCTGGGAGTGGCGTGCCGTTTGATGCAGGTTTATGA 1581 0.4877 MDKLFLNCFILYCLLYSLLAVHGKQLSCNETPYPRVCMHYIDTTNTLSTLDASSSSFHDVALKVTMEQAIEAHKLVSNMDLNNFKDKRAKSAWEDCLELYENTLYQLKRSVNSNNLNDRLTWQSASIANHQTCQNGFTESNLPYHLNYFPSMLSNFSKLLSNSLSISKAMTLTSSSLSSSSIKQSGGRRLRSDGFPYWLSHSDRRLLQESEPKADVVVAQDGSGNYKTISEGVAAAAKLSGKGRVVVHIKAGVYKESIDIRRTVKNLMIIGDGMGATIVTGNDNVQDGSTTFRSATFAVSGDGFIARDMTFENTAGPQKHQAVALRSGADRSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTVDFIFGDAVTVLQNCNIYVRKPMSNQQNTVTAQARTDPNENTGIIIHNCRITAAGDLKAVQGSFRTYLGRPWQKYSRTVVMKSALDGLINPAGWSPWAGNFALSTLYYAEHANTGGGAATGGRVKWPGFRVITSSEAVKFTVGDFLAGDSWIPGSGVPFDAGL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3379 526 SMART PMEI_2 19 166 IPR006501 GO:0004857
Ssu5g3379 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Ssu5g3379 526 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Ssu5g3379 526 Pfam Pectinesterase 215 512 IPR000070 GO:0030599|GO:0042545
Ssu5g3379 526 SUPERFAMILY Pectin lyase-like 212 525 IPR011050 -
Ssu5g3379 526 PANTHER PECTINESTERASE 19 525 - -
Ssu5g3379 526 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 19 525 - -
Ssu5g3379 526 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Ssu5g3379 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 171 IPR035513 -
Ssu5g3379 526 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Ssu5g3379 526 Gene3D - 209 526 IPR012334 -
Ssu5g3379 526 CDD PMEI-like_3 26 170 - -
Ssu5g3379 526 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3379 Ssu-Chr5 83906930 83910794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3379 4 526 Carbohydrate Esterase AT1G23200 51.718 0.0 536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3379 5 83906930 83910794 Ssu5g3379 5 83906930 83910794 ECH