Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3378 ATGGTGCTCTTCAATGTTTCACGCATAGAGACCACTCCCTTCGATGGCCAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGGTGAAAGTATTCGTGCAATCTCATTACCTCCATAACTTTGTTCAGTCTACATTCAATGCATTAACTGCGGAAAAAGTTCGAGGTGCAACGCTAGTTGTATCTGGTGATGGTCGCTATTTTTCAAAGGAAGCTATTCAGATTATAACTAAAATGTCAGCAGCAAATGGAGTAAGACGTGTTTGGATTGGTCAAAATGGATTGCTTTCAACTCCTGCAGTATCTGCTGTTATACGTGAAAGAGTTGGAGCTGACGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAACCCCGGTGGCCCTCATGAGGATTTTGGGATTAAATATAACATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATgaatacacaacaacaattaagGAGTACTTGATTGCTGAAGATCTGCCAGAGGTGGATATCACCACAACTGGTGTTACAAACTTTACAGGCCCTGAAGGACCATTTGATGTTGAGGTTTTTGATTCAGCAAGTGACTATGTAAAATTGATGAATTATGATGCACTACATGGTGTTGCTGGAGCTTATGCAAAGCGTATTTTTGTGGATGAGCTTGGGGCACAAGAAAGCTCTTTACTGAACTGTACACCAAAGGAAGACTTTGGAGGTGGGCACCCAGACCCCAATTTGACATATGCGAAAGAGTTGGTAGCTTGTATGGGATTGGGCAAATCAGAACCACAAGATGAGCCCCCAGAGTTTGGTGCTGCTGCTGATGGTGACGCAGATCGCAACATGATACTTGGTAAAAGGTTTTTTGTCACTCCTTCAGATTCTGTGGCCATTATTGCTGCAAATGCTGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAGgaGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACatctgaatttgaaattttttgagGTCCCCACTGGTTGGAAGTTCTTTGGTAATTTAATGGATGCTGGATTGTGTTCAATCTGTGGTGAGGAAAGTTTTGGGACTGGTGCAGCAAAGGAACTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAGATTGTTAAGGGGGTAAGGTCAGATGTTTCAAATGTTGTCCACGCTGATGAATTTGAGTACAAAGATCCTGTGGATGGTTCCATCTCATCACATCAGGGAATCCGATACTTGTTTGAGGATGGATCACGATTGATTTTCCGCCTCTCTGGAACTGGATCAGAAGGTGCAACTATTCGACTATACATTGAGCAATATGAGAAGGATCCATCAAAGATTGGGAGACTTTCAAATGAAGCACTTGCACCTCTTGTGGAAGTTGCATTGGAACTTTCAAAGATGCAGGAATTTACTGGTCGATCCGCTCCAACAGTCATTACATGA 1503 0.4271 MVLFNVSRIETTPFDGQKPGTSGLRKKVKVFVQSHYLHNFVQSTFNALTAEKVRGATLVVSGDGRYFSKEAIQIITKMSAANGVRRVWIGQNGLLSTPAVSAVIRERVGADGSRATGAFILTASHNPGGPHEDFGIKYNMENGGPAPEGITDKIYEYTTTIKEYLIAEDLPEVDITTTGVTNFTGPEGPFDVEVFDSASDYVKLMNYDALHGVAGAYAKRIFVDELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVACMGLGKSEPQDEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSICGEESFGTGAAKELMAYLVKLQSSLSEVNQIVKGVRSDVSNVVHADEFEYKDPVDGSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSNEALAPLVEVALELSKMQEFTGRSAPTVIT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3378 500 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 118 127 IPR016066 GO:0000287
Ssu5g3378 500 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 373 500 IPR045244 GO:0004614|GO:0005975
Ssu5g3378 500 Gene3D - 5 201 - -
Ssu5g3378 500 SUPERFAMILY Phosphoglucomutase, first 3 domains 3 206 IPR016055 GO:0005975|GO:0016868
Ssu5g3378 500 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 411 461 IPR005843 GO:0016868|GO:0071704
Ssu5g3378 500 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 3 114 IPR045244 GO:0004614|GO:0005975
Ssu5g3378 500 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 297 374 IPR005846 GO:0005975|GO:0016868
Ssu5g3378 500 SUPERFAMILY Phosphoglucomutase, first 3 domains 205 294 IPR016055 GO:0005975|GO:0016868
Ssu5g3378 500 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 205 289 IPR005845 GO:0005975
Ssu5g3378 500 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 114 374 IPR045244 GO:0004614|GO:0005975
Ssu5g3378 500 Gene3D - 367 500 - -
Ssu5g3378 500 PANTHER BNAA09G30060D PROTEIN 373 500 - -
Ssu5g3378 500 PRINTS Phosphoglucomutase/phosphomannomutase family signature 202 221 IPR005841 GO:0005975|GO:0016868
Ssu5g3378 500 PRINTS Phosphoglucomutase/phosphomannomutase family signature 117 131 IPR005841 GO:0005975|GO:0016868
Ssu5g3378 500 PRINTS Phosphoglucomutase/phosphomannomutase family signature 273 288 IPR005841 GO:0005975|GO:0016868
Ssu5g3378 500 PRINTS Phosphoglucomutase/phosphomannomutase family signature 238 251 IPR005841 GO:0005975|GO:0016868
Ssu5g3378 500 Gene3D - 202 295 - -
Ssu5g3378 500 PANTHER BNAA09G30060D PROTEIN 114 374 - -
Ssu5g3378 500 PANTHER BNAA09G30060D PROTEIN 3 114 - -
Ssu5g3378 500 SUPERFAMILY Phosphoglucomutase, first 3 domains 281 374 IPR016055 GO:0005975|GO:0016868
Ssu5g3378 500 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 17 164 IPR005844 GO:0005975|GO:0016868
Ssu5g3378 500 SUPERFAMILY Phosphoglucomutase, C-terminal domain 368 500 IPR036900 GO:0016868|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3378 Ssu-Chr5 83867463 83878911 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3378 5 83867463 83878911 Ssu5g3378 5 83867463 83878911 ECH