Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3364 ATGGCTGAATTCACTGAAGATTTGCAAAGTCTTAGACACTCGTTTCCTTTCTTAGATATTGATAACATGGAAATGCATAACTTGGTGCCATTTGACAGCTTCTTCGGCTCTCCAGAACCTGAAATTCCAGGAATCTTGGAGGAAAATTTTCCGGTTCTTTTTCAATGTGTCAATCACAATGCAGTTCCAGTTTTAGCTCCTATTAGTTCAGCTAAAAATGAAACAGATGAAGGTAAAAAGAGGAAAGCAAGTGATGTATGTGAGCCAAGTTCTGCAAATTCAACTTCTGTTGTTTCTGAGAGTGGAAGCAAGACAAGAAATAGTTCTGGAAAAGGCAAGAGAGTAAAAAGGAATGTAATAGAAGACAAGAAACCAAATGAAGTAGTTCATTATAGAGCCAAACGAGGTCAGGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACCATGGGTATGGCAATAATGTTGGACGAGATCATAAACTATGTCCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCTACGAAGCTTACTGCAGCTAGTACCTATTATGACTTCAATTCAGAGACAGATGCTTTAGAAACAATGCAGAGAGCAAGGGCATCCGAGGCAAAAGAGTTGGGCAAGTATGTGAGAGAAGGAAGTGAAGGAGTTTCTTGCTTTGAACCAACATGGCCGTGGTCCTTGTGA 753 0.405 MAEFTEDLQSLRHSFPFLDIDNMEMHNLVPFDSFFGSPEPEIPGILEENFPVLFQCVNHNAVPVLAPISSAKNETDEGKKRKASDVCEPSSANSTSVVSESGSKTRNSSGKGKRVKRNVIEDKKPNEVVHYRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSTKLTAASTYYDFNSETDALETMQRARASEAKELGKYVREGSEGVSCFEPTWPWSL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3364 250 Gene3D - 137 200 IPR036638 GO:0046983
Ssu5g3364 250 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 247 IPR024097 GO:0006355
Ssu5g3364 250 PANTHER TRANSCRIPTION FACTOR BEE 1 16 247 - -
Ssu5g3364 250 MobiDBLite consensus disorder prediction 87 108 - -
Ssu5g3364 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 205 IPR036638 GO:0046983
Ssu5g3364 250 MobiDBLite consensus disorder prediction 72 124 - -
Ssu5g3364 250 CDD bHLH_AtBPE_like 127 212 - -
Ssu5g3364 250 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Ssu5g3364 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
Ssu5g3364 250 SMART finulus 143 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3364 Ssu-Chr5 83598133 83599848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3364 1 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 47.101 2.05e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g3364 HLH 0.00022 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3364 5 83598133 83599848 Ssu5g3364 5 83598133 83599848 ECH
Ssu3g0244 3 4364514 4368053 Ssu5g3364 5 83598133 83599848 ECH
Ssu2g1259 2 54581682 54582263 Ssu5g3364 5 83598133 83599848 ECH