Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3355 ATGAGAAACTATCTGCAGTTTCTTTGGCCTCAGATTTTGGGTTTCCTATTATTACTCGCTGGTCTATGTCTAGTTCAAACAAAGTCCACCATTGAAGCATGCAATTCCTCAGACTCCTGCCCCTCTCTTCTCTCCTATCTCTTGCCTTGGGACTCCAAGTTCTCTGAAATCGCCACTCGCTTCCATGTAAACGTCCCTGATATCTTGGCCTCAAACTCTGTCTTCCCCATAACACCATCAAGTGCACAACAAATCCTTAGTGCCAAATCATTAGTGAAGATACCCATTTCGTGTTCTTGCGTGGATGGCATCCGAAGGTCCATATCAACCACTTACACTGTTCATGCAGCTGACACACTTGCCTCCATATCGGATGGTTATGGTGGGCTTGTTAGTGCTGAACAAATCAAGAGTGTGAACAGCATCAATGCCACTAACCCCTTGACAAGTGGAGGCACCCTTGTTATTCCACTACCATGCACATGTTTTAATAATGTGAATAATGGGGGAACCGCTATTTATATGTCATATGTGGTACAGAGAGGGGAGAGCTTAGAGAGCATAGCAACAATGTTTGGTACCACTTTTTATGACTTGGAAACTGTAAATGGGCTTGGGGAAGATGCAGTAGATCCGGGAGATATACTATCTGTTCCCATTGCAGCATGTTCATCAGCAACCTTGAATTGGTACAATGAGAGTATGATGGTCCCAAACGGGTCATATACATTAACTGCCAGCAACTGCATCAAATGCACTTGTGAATCAATGGATATCAAGATGCGATGTGTTCCTTCTGGACTAGATATCCCCTGCTATAATTTACGTTGCAAAGGATCCAATCTTGTTATTGGGGATGAATATGTGGAGCATTCAAAAACAGGTTGCAATGTGAGCCAATGTGTCTACCGTGGccataggggtggcaaaattctGAGTAGTATGAATAACTCTTCTTACCTCCAGTGCCCGGATAATCGAAGTCATAGTGGAGCATCATGTTCGCCTTCCACGTCACCATATCCTGCAGACCCATTTGTTATGTCTCCAAAGCCATCTCCTTTCTTGCCACTGCCAGTTTCTAAGGCTGCTCTGAGGACTCGCGCCTCCAGTGGAAGGCTTGGTCAAGTTTTAATCAATGTGCTGCAATTATTCTTGTTAGaatttatcctttattttctGGTTTGA 1188 0.4276 MRNYLQFLWPQILGFLLLLAGLCLVQTKSTIEACNSSDSCPSLLSYLLPWDSKFSEIATRFHVNVPDILASNSVFPITPSSAQQILSAKSLVKIPISCSCVDGIRRSISTTYTVHAADTLASISDGYGGLVSAEQIKSVNSINATNPLTSGGTLVIPLPCTCFNNVNNGGTAIYMSYVVQRGESLESIATMFGTTFYDLETVNGLGEDAVDPGDILSVPIAACSSATLNWYNESMMVPNGSYTLTASNCIKCTCESMDIKMRCVPSGLDIPCYNLRCKGSNLVIGDEYVEHSKTGCNVSQCVYRGHRGGKILSSMNNSSYLQCPDNRSHSGASCSPSTSPYPADPFVMSPKPSPFLPLPVSKAALRTRASSGRLGQVLINVLQLFLLEFILYFLV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3355 395 CDD LysM 176 218 IPR018392 -
Ssu5g3355 395 CDD LysM 110 156 IPR018392 -
Ssu5g3355 395 SMART LysM_2 111 157 IPR018392 -
Ssu5g3355 395 SMART LysM_2 176 219 IPR018392 -
Ssu5g3355 395 Gene3D LysM domain 104 167 IPR036779 -
Ssu5g3355 395 Gene3D LysM domain 168 229 IPR036779 -
Ssu5g3355 395 SUPERFAMILY LysM domain 175 219 IPR036779 -
Ssu5g3355 395 Pfam LysM domain 112 157 IPR018392 -
Ssu5g3355 395 Pfam LysM domain 177 219 IPR018392 -
Ssu5g3355 395 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 21 348 - -
Ssu5g3355 395 ProSiteProfiles LysM domain profile. 175 218 IPR018392 -
Ssu5g3355 395 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 21 348 - -
Ssu5g3355 395 ProSiteProfiles LysM domain profile. 110 156 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3355 Ssu-Chr5 83475791 83479281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3355 16 364 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 42.045 7.16e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3355 - - gmx:100819382 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3355 5 83475791 83479281 Ssu5g3355 5 83475791 83479281 ECH