Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3129 atggcCGTGAAAATGCACCTTAGTTTCTTCATCTTTGCCACGATTGGCTGCATGCTACTGGTATCTGTGAGTTCGACAGCAACTCATGTTGTCGGAGACAAATTGGGTTGGAATTTGCCCAGCTACTCAGGCTTCTACGCGGACTGGGCCAAGAAAAGAGCCTTCGCTGTTGGTGACGCACTTCTTTTCCAGTACCACCCGGGACTCAACACAGTGGTTCAAGTAAACAAGGACGACTACGAACATTGCACTACCAGAAATACCCTCCACACGTACTTCAGAGGGAACTCCACTGTTACTTTGGGCAGGGCTGgggattattttttcttctcttccgtTGGCAAGCATTGCGAGGCGGGCCAAAAGCTCCAGGTTACTGTTCCTCAGGGAAGCAAATCCTCTCACTAA 408 0.4657 MAVKMHLSFFIFATIGCMLLVSVSSTATHVVGDKLGWNLPSYSGFYADWAKKRAFAVGDALLFQYHPGLNTVVQVNKDDYEHCTTRNTLHTYFRGNSTVTLGRAGDYFFFSSVGKHCEAGQKLQVTVPQGSKSSH 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3129 135 PANTHER PLASTOCYANIN-LIKE DOMAIN PROTEIN 2 128 - -
Ssu5g3129 135 PANTHER BLUE COPPER PROTEIN 2 128 IPR039391 GO:0009055
Ssu5g3129 135 Pfam Plastocyanin-like domain 37 121 IPR003245 GO:0009055
Ssu5g3129 135 SUPERFAMILY Cupredoxins 27 128 IPR008972 -
Ssu5g3129 135 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Ssu5g3129 135 Gene3D - 27 135 IPR008972 -
Ssu5g3129 135 ProSiteProfiles Phytocyanin domain profile. 27 129 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3129 Ssu-Chr5 79482307 79483080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3129 11 127 Phytocyanin Superfamily AT4G31840 37.288 8.73e-24 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3129 - - gmx:102660389 218.394