LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2957	ATGCATCATCATGCAAGAGATATTACTAGACGCAATAAGAGTCTTATAATGGATCGAAAACATGGAAAGAGGTCGCTTCCTTTGGAAGAAGAAGCGGAAGAGAAAGCGTTTCCGATTTATTCTACTCGGTCCGAGCAAGACGTGTCGGCTGTGGTATCGGCCCTTGTGCAAGTCATTGGTGGCAATCCAGTGCACAAAGATCCAGTAACTGTGTCTCAGTCCAGTGCTGTAGGGAATGAACAATCCCAATTACCACAACATCAAGGAAACATAATAAAACGACATTATAGAGGAGTGAGACAGCGACCATGGGGCAAGTGGGCCGCGGAGATTCGCGACCCAAAGAAAGCAGCGAGAGTTTGGCTTGGAACTTTTCACACTGCTGAGGCTGCTGCACTTGCTTACGATGAAGCAGCTCTCAGATTCAGAGGAAGCAAAGCTAAGCTTAATTTTCCAGAAAGGGTTCAACTTGGTTACCTCACAAATCGTCCAGAATTATGCCATGCCGCGTCACGCAGTCACAATAATAATGATCAACAAGCACGTACCCCACGCTTTTCGCTAGAAACGTCTTCAAGTCCGTTTCAACATGCCCCAGTACTTCGTGGCGGTGCAACTAACAACTTCAATAATGACACGTTTGTTTCTTCGTCTTCATCGTCATCATCCGCGGGACTATCTCGGCCTCGACAACAAGAAGAGCTTCTAACGTTTTCGATGCAATCTGCAGGTTCTTCTTCTGCTTCTGAGCCTCCTAGGAAACGGACAATTGATTTGGATGGCAAACGTTGA	792	0.4646	MHHHARDITRRNKSLIMDRKHGKRSLPLEEEAEEKAFPIYSTRSEQDVSAVVSALVQVIGGNPVHKDPVTVSQSSAVGNEQSQLPQHQGNIIKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFHTAEAAALAYDEAALRFRGSKAKLNFPERVQLGYLTNRPELCHAASRSHNNNDQQARTPRFSLETSSSPFQHAPVLRGGATNNFNNDTFVSSSSSSSSAGLSRPRQQEELLTFSMQSAGSSSASEPPRKRTIDLDGKR	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g2957	263	SMART	rav1_2	95	158	IPR001471	GO:0003700\|GO:0006355
	Ssu5g2957	263	MobiDBLite	consensus disorder prediction	171	263	-	-
	Ssu5g2957	263	ProSiteProfiles	AP2/ERF domain profile.	95	152	IPR001471	GO:0003700\|GO:0006355
	Ssu5g2957	263	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110	54	246	-	-
	Ssu5g2957	263	SUPERFAMILY	DNA-binding domain	95	153	IPR016177	GO:0003677
	Ssu5g2957	263	PANTHER	DNA-BINDING DOMAIN	54	246	IPR044808	GO:0003700\|GO:0009873
	Ssu5g2957	263	Gene3D	AP2/ERF domain	94	155	IPR036955	GO:0003700\|GO:0006355
	Ssu5g2957	263	PRINTS	Ethylene responsive element binding protein signature	134	154	IPR001471	GO:0003700\|GO:0006355
	Ssu5g2957	263	PRINTS	Ethylene responsive element binding protein signature	96	107	IPR001471	GO:0003700\|GO:0006355
	Ssu5g2957	263	MobiDBLite	consensus disorder prediction	10	26	-	-
	Ssu5g2957	263	Pfam	AP2 domain	95	144	IPR001471	GO:0003700\|GO:0006355
	Ssu5g2957	263	MobiDBLite	consensus disorder prediction	1	26	-	-
	Ssu5g2957	263	MobiDBLite	consensus disorder prediction	171	252	-	-
	Ssu5g2957	263	CDD	AP2	95	153	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2957	Ssu-Chr5	76334643	76341366	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g2957	37	158	AP2-EREBP Transcription Factor Family	AT5G61890	63.359	1.19e-49	162

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Ssu5g2957		AP2	5.5e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g2444	1	68043719	68045809	Ssu5g2957	5	76334643	76341366	ECH
	Ssu4g1841	4	33588940	33598925	Ssu5g2957	5	76334643	76341366	ECH
	Ssu3g0244	3	4364514	4368053	Ssu5g2957	5	76334643	76341366	ECH
	Ssu5g2957	5	76334643	76341366	Ssu5g2957	5	76334643	76341366	ECH
	Ssu5g2957	5	76334643	76341366	Ssu1g2444	1	68043719	68045809	PCT