Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2586 ATGGAAATTCAGAATCACCGTCACCGAACGAACATAGTTTCGCTTGACGTTCCTGGATTACCCAAAAACCTCCGTGCTTgctgtgttgtgttgtgttgtgtccagttctcttctctcctctcgTCTTCCATCACCGCCATGTTCTTCGAATCCCGATccctttctctcctcttcccgCTCCTACtatctctcttcctctcttcgGCCTTCGCTTCAGAGTCAGATCACAAGTATCAACGTGATGAAGCAGTTACCCTTTGGGTGAACAAAGTTGGTCCTTATAACAATCCACAAGAAACATACAACTATTACAGCCTCCCATTTTGTCATCCATCTAGTAGTGTTAGTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAATGAACTCATTGATAGCCAAATTGAGATAAAGTTCCTAAGAAATGTGGATAAGACTATCTTTTGCCAGATAGATCTCGATGATGCAAAGGTGAAACAGTTCAAGGATGCAATAGAGAATAATTACTGGATTGAGTTCTTCATGGgaTATGTTGGTGAGCTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCctttacacacacaaaaacattATTGTTAAATACAACAATGATCAGATTATTCATGTCAATCTCACTCAGGATATCCCAAAGCCTATGGAAGTAGGAAAACATTTGGACATGACATATTCTGTCAAATGGATTTCTACCAATGTCACTTTTGGGCGCCGCTTTGATGTATACCTGGACCATCCTTTCTTCGAGCATCAGATTCACTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGATTTGGAAAGTCTGGAGAGAGATGTTAGTGAAGAATCTGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCAACTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCTCAGCTAGCGTTGCTGGTTCTTCTTGTCATCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGGCGAGGATCAATTGTCACCACCTTCATTGTGTGTTATGCTCTCACATCTTTCATTTCTGGTTATGTGAATGGGGGAATGTACTCACGAAATGGGGGTAAAAACTGGATTAAATCCATGATCCTTACAGCTTCTCTGTTCCCATTCATGTGCTTTGGAATTGGATTTATCTTAAACACAATTGCTATATTCTATGGGTCTCTAGCAGCAATTCCATTTGGCACAATGGTGGTTGTATTTGTTATTTGGGCTTTCATCGCTTTCCCTCTAGCACTTCTTGGCACAGTTGTTGGAAGAAACTGGAGTGGTGCTCTGAATAATCCCTGTCGTGTAAAGACTATTCCTCGTCCCATTCCTGAAAAGAAGTGGTACCTCACACCCTCTGTGGTTTCTCTGATGGGAGGACTGCTACCCTTTGGCAGCATATTCATTGAAATGTATTTCGTATTCACTTCCTTCTGGAATTACAAGGTGTACTATGTGTTTGGCTTTATGCTGCTAGTCTTTCTGATTCTTATCATCGTTACTGTTTGTGTGACAATTGTGGGGACATACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGACTTCTTTCTTTTCAGCTGCGTCAACAGCTGTTTATGTGTATTTGTACTCAATATACTACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTGGAGCTGTGGGTTTTCttggttcaaatttgtttgtgaGGAGGATCTACAGAAACATCAAGTGCGATTAA 1899 0.3849 MEIQNHRHRTNIVSLDVPGLPKNLRACCVVLCCVQFSSLLSSSITAMFFESRSLSLLFPLLLSLFLSSAFASESDHKYQRDEAVTLWVNKVGPYNNPQETYNYYSLPFCHPSSSVSAAHKWGGLGEVLGGNELIDSQIEIKFLRNVDKTIFCQIDLDDAKVKQFKDAIENNYWIEFFMGYVGELHPDKNSDNGKHVLYTHKNIIVKYNNDQIIHVNLTQDIPKPMEVGKHLDMTYSVKWISTNVTFGRRFDVYLDHPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVFRPPRNLVILSAVVGTGAQLALLVLLVILLAIVGMLYVGRGSIVTTFIVCYALTSFISGYVNGGMYSRNGGKNWIKSMILTASLFPFMCFGIGFILNTIAIFYGSLAAIPFGTMVVVFVIWAFIAFPLALLGTVVGRNWSGALNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVFGFMLLVFLILIIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFSLGLGILCGAVGFLGSNLFVRRIYRNIKCD 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2586 632 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 52 632 IPR004240 GO:0016021
Ssu5g2586 632 Pfam Endomembrane protein 70 100 589 IPR004240 GO:0016021
Ssu5g2586 632 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 52 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2586 Ssu-Chr5 70385970 70398088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2586 67 632 Miscellaneous Gene Families AT1G10950 86.713 0.0 968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2586 5 70385970 70398088 Ssu5g2586 5 70385970 70398088 ECH
Ssu1g0098 1 3300688 3306129 Ssu5g2586 5 70385970 70398088 PCT