Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2280 ATGGATAATGGTTACTTCCCTTCTCCACGCCATGATGCTTTTCCAGCTGGTCTGCGAGTTcttgttgttgatgatgatcCAACATGGTTGAGGATCCTtgaaaagatgctcaagaagtgCTTGTATGAAGTGACAACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTCGGGAAAGGAAAGATGCGTATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGGTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTCCAACATGGAGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAACACGTCTTTAGAAAAAGGATGCATGAGGCAAGAGATTTTGAAAGTCTTGAGGGTTTTGAGGGCATTCACTTCATGAGAAATGGATCAGATCATTCCGATGATGGTAACCTGTTTGCTGTAGAAGAAATGACctcattgaagaaaagaaaagatgcaGATGACAAACATGATGACCAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGAGTAGTGTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCGTGGTTGACTAGAGAAAATGTCGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCAAGTGGAATAAAGCATTTGGATTCACCTTCAAAAGATCCTGGaagttttagttttctaaacaCTGCAAACAAGCAACAAAATGATGTTGCCAGTGACAGCTTCAGTTATTCGGATGGAATTTTACTACTTCAGATGGATGCTCCAAGTCATGAAGGTGATCTCAAGGAAATTGTGTCCGAGCCTACAACCGAAAAAAGAAGAGCTTCGACTAGTGACATTCCTGACCCAGAGATACAAAAAAGTTCACAGATGAGCCTTAATCTACCTTTTGCATCTGTAGAGTCATCAGAAGCAAACCATGCAGTATTTGATTGCACCATACCAACACAGTACTGCTGGAGCGAGTTTCCAAAAGGGCCACTCAAAGACGAACAGAAGACACTTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACATGGCACACAGCATCACATTCAGGCTGATCAATCACAATCAATTGCCTCAATTAATTCCAATCCTTCCATAACCGAAGAAGATGTAGCTCCCAGCTTAGAGACCAAACCTTTGTATGCTGGCTACAAGAGTGATTATGTCAGTCCTGTGAGTTCAATAGGATCTGCAGTTGAAGCCTTTCCTAATCAGCCCAAAAGCCTTATGGTGAATGATCAATCTTCAGAGCCCATTTTCACCTCAAATTTAGGCTTGAAGACTCAAGGATTTAATCTAGATTGCATTTCTGATCTGGAATTTTACCAAAGGAACCTATTATTGGGTGGTGAGGCAGGTTCTGCACCTTTGGAGGAGGacttaaatttctttttgcTACATGGTGAATGCTACAACATGAATTTCGGCCTGCAGAATATAGACATGTCAGAGTATTATGATCCAAGGCTTATTGCTGAAGTTCCTAACCACTTTTAA 1695 0.39 MDNGYFPSPRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESLEGFEGIHFMRNGSDHSDDGNLFAVEEMTSLKKRKDADDKHDDQEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHLDSPSKDPGSFSFLNTANKQQNDVASDSFSYSDGILLLQMDAPSHEGDLKEIVSEPTTEKRRASTSDIPDPEIQKSSQMSLNLPFASVESSEANHAVFDCTIPTQYCWSEFPKGPLKDEQKTLVQLEDSFSQLPLHGTQHHIQADQSQSIASINSNPSITEEDVAPSLETKPLYAGYKSDYVSPVSSIGSAVEAFPNQPKSLMVNDQSSEPIFTSNLGLKTQGFNLDCISDLEFYQRNLLLGGEAGSAPLEEDLNFFLLHGECYNMNFGLQNIDMSEYYDPRLIAEVPNHF 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2280 564 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Ssu5g2280 564 Gene3D - 18 184 - -
Ssu5g2280 564 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 550 - -
Ssu5g2280 564 CDD REC_typeB_ARR-like 20 134 - -
Ssu5g2280 564 MobiDBLite consensus disorder prediction 321 341 - -
Ssu5g2280 564 Gene3D - 197 259 - -
Ssu5g2280 564 SMART REC_2 18 130 IPR001789 GO:0000160
Ssu5g2280 564 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Ssu5g2280 564 MobiDBLite consensus disorder prediction 262 287 - -
Ssu5g2280 564 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 550 IPR045279 GO:0009736
Ssu5g2280 564 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Ssu5g2280 564 SUPERFAMILY CheY-like 17 142 IPR011006 -
Ssu5g2280 564 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Ssu5g2280 564 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Ssu5g2280 564 MobiDBLite consensus disorder prediction 321 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2280 Ssu-Chr5 65070802 65075274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2280 12 266 Response Regulator Gene Family AT2G25180 54.924 8.71e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ssu5g2280 Response_reg 1.2e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2280 - K14491 gmx:100778324 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1776 9 55064489 55068249 Ssu5g2280 5 65070802 65075274 PCT