Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2186 ATGCCGCCTTTGCATTATCAGAGAATGGGGTGGCTagcaaaaggaaaagaagaccCGCAGGCACACCCGGtaaagttttccctttttcggGCTAGGTTTGAAGCTTTTAGCAAAATTCGTGGGGTTTTGATTTTCTCtccaaagttaatttttttttacttgagtGCAGATCCAGATGCTGAGGTTGTGTCTCTCTCGCCCACCACCCTGCTGGAGTCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGGAGGCACAAGGTGCCGTGGAAACTTCTCAAGAGGGAGACGCAAGGGCAGAAGAAGAGGGTGTTCGTGTGTCCGGAGCCAAGCTGCTTGCACCATGACCCTTGCCATGCCCTTGGGGACCTTGTGGGGATCAAGAAGCACTTCAGGAGGAAGCACAGCAACCACAAGCAGTGGGTCTGTGACAAGTGCTCCAAAGGCTATGCTGTTCAATCTGATTACAAAGCACACATCAAAACCTGTGGCACCAGGGGCCATTCCTGTGACTGTGGCCGCGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCAGGCAGCACCGGCCAGAGTTACAAGCACTGCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCACTGCCAAAACCAGCTGATCAACCACCAACTAGTACTGTCTTATTAACTTCAGAGATACGCAATAACAAGTCCACCACCTCACATAACTTAGAACTTCAGCTCTTACCCTCCTCAATAAACTCTCAAGAAAAACGAAATTCAAAGGAAAACTATGAAACCCGTTTGAAGCTTTCAATAGGCTCATGtgataatgacaaagggaaTGAATCAGAGAGAGCATGCTCAGAAGCACATAGGAGCCCACCTGCTGCAGAAAGGAATGCACATGTGAGTGACTATTCCACATTGGAAGTAGCAAGGTTGAAAGAGTTTGCAGGTGAGGAACTCAAGTTAGCCATGGCAGAAAAGGCTTATGCAGAAGAGGCTAGGAGAGAGGCCAAACGTCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAACTTGCAAAGGCTGAAGAGTTGAGAAAGCAAGCCATCAAGAAGTTAAGCTCCACTGTTACGGAAATAACATGCCAAACTTGCAAACAACAGTTCCAGTCTTCAACTGTTGGGGTTCCATCAGAAGAGACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1362 0.4523 MPPLHYQRMGWLAKGKEDPQAHPVKFSLFRARFEAFSKIRGVLIFSPKLIFFYLSADPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPPLQGLPLPKPADQPPTSTVLLTSEIRNNKSTTSHNLELQLLPSSINSQEKRNSKENYETRLKLSIGSCDNDKGNESERACSEAHRSPPAAERNAHVSDYSTLEVARLKEFAGEELKLAMAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQAELAKAEELRKQAIKKLSSTVTEITCQTCKQQFQSSTVGVPSEETSIVMSYMSSATTEGEAE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2186 453 MobiDBLite consensus disorder prediction 308 328 - -
Ssu5g2186 453 Coils Coil 352 407 - -
Ssu5g2186 453 Pfam Zinc finger, C2H2 type 76 98 IPR013087 -
Ssu5g2186 453 MobiDBLite consensus disorder prediction 252 287 - -
Ssu5g2186 453 SMART c2h2final6 117 147 IPR013087 -
Ssu5g2186 453 SMART c2h2final6 76 98 IPR013087 -
Ssu5g2186 453 SMART c2h2final6 153 180 IPR013087 -
Ssu5g2186 453 MobiDBLite consensus disorder prediction 214 331 - -
Ssu5g2186 453 MobiDBLite consensus disorder prediction 214 235 - -
Ssu5g2186 453 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 56 453 - -
Ssu5g2186 453 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Ssu5g2186 453 Gene3D Classic Zinc Finger 138 215 - -
Ssu5g2186 453 PANTHER OS03G0310200 PROTEIN 56 453 IPR039288 GO:0009630
Ssu5g2186 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Ssu5g2186 453 Gene3D Classic Zinc Finger 55 119 - -
Ssu5g2186 453 SUPERFAMILY beta-beta-alpha zinc fingers 75 173 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2186 Ssu-Chr5 62820385 62822663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2186 57 453 C2H2 Transcription Factor Family AT2G01940 56.355 8.30e-146 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g2186 zf-C2H2 0.0043 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2186 5 62820385 62822663 Ssu5g2186 5 62820385 62822663 ECH