Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2185 ATGGAGAACAACCCGATTCAGCTTCTGCCTCATCTCACTGTGACACTTCTTATGATCACTGTTTTGTTTCCTGTGACTGAAGGTGCAGCAGTTTCCTCCATCAAGACAGATGCACAGGCTCTTCTTACGTTCAAAAGCAGGATTCAGAAGGATCCGGGTGGAGTTTTGTCAGGGTGGAATCTGAATAGGAACCCATGCAGCTGGCATGGAGTCTCTTGCacccatggaagagttactcaGCTTGATATTAGTGGGAATAATAACCTTGCTGGGACTATATCTCTTGACCCTTTGTCTtctttagatatgttatctgtTCTGAAATTGTCTTTGAATTCATTTTCTGTAAATTCTACTTCTTTGCTTCAGCTCCCATATAGTTTGACACAGCTTGATCTATCCTTTGGTGGAGTTACAGGTCCTGTCCCTGAGAACCTTTTCTCCAAGTGTCCAAATCTTGTTGTTGTGAATCTTTCTTACAACAACTTGACAGGCCCTATTCctgaaaatttctttcaaaattctgatAAACTGCAGGCCCTTGACCTCTCTTCCAACAACCTGACAGGGTCAATTTTTGGCCTGAAAATGGAGTGCTTTTCCTTGTTGCAACTTGATCTATCTGGAAACCGTTTGTCAGACTCAATTCCGCTCTCTTTGTCAAACTGCACCAGCcttaaaagtttgaatttagCCAACAATATGATTTCTGGGGAAATCCCAAAAGCTTTGGGTCAGCTAAACAAACTACAGACCTTGGATCTTTCCCACAACCAACTCACTGGCTGGATCCCTTCTGAATTGGGAAATGCATGTGCTTCCCTTTTGGAGCTTAAACTTTCTTTCAACAACATCTCAGGCTCAATCCCATCTGGTTTCTCTTCTTGCACTTGGCTGCAACTTCTTGACATATCCAACAACAATATGTCAGGACAGTTACCAGATTCAATCTTTCAGAACCTTGGATCATTACAGGAACTGAGGCTGGGAAATAATGCTATCACAGGGCAATTTCCATCTTCAATATCTTCCTGCAAAAAATTGAAGATTGTGGATTTCagctcaaataaaatttatggatCTATCCCCAGAGATTTATGTCCAGGGGCAGCCTCACTTGAGGAGCTGAGAATGCCAGATAATCTCATTACAGGAAAAATCCCAGCTGAACTGTCAAAGTGCTCACAGCTGAAGACACTTGATTTTAGTCTGAACTATCTCAATGGTACTATTCCTGATGAGCTTGGACAACTTGAAAATCTTGAGCAGCTAATAGCATGGTTCAATGGCTTGGAAGGAAGAATTCCACCAAAGTTGGGTCAGTGTAAGAATCTTAAGGATCTCATACTGAATAATAACCACCTCACTGGTGGAATTCCCATTGAGTTGTTCAATTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGAACTCAGTGGTGAAATACCGCGCGAGTTTGGCCTCTTGACAAGGTTAGCAGTTGTGCAGCTTGGAAACAACAGCTTGACGGGGGAGATACCAGCAGAGCTAGCAAATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTCCAAGACTTGGCAGGCAGCTAGGAGCAAAATCCTTGTTTGGGATCCTTTCAGGGAACACTCTAGTGTTTGTAAGAAATGTTGGAAACTCATGCAAAGGAGTTGGAGGTTTGCTAGAATTCTCTGGTATTCGACCTGAAAGACTCTTGCAGGTCCCAACATTGAGGACTTGTGATTTCACAAGACTATATTCTGGTCCTGTCCTCAGCCTGTTCACCAAGTACCAGACCTTGGAGTATCTTGATCTTTCCTATAACGAGCTTCGCGGAAAAATCCCAGAAGAATTTGGAGATATGGTGGCTTTACAGGTTCTTGAATTATCTCACAATCAGCTGTCTGGAGAAATCCCTTCATCACTTGGCCAGCTAAAAAATTTGGGAGTGTTTGATGCATCACACAATAGACTGCAGGGTCATATCCCAGACTCATTCTCAAACCTCTCTTTCTTAGTGCAAATTGATCTATCTAACAATGAGTTAACAGGGCAAATTCCATCTAGGGGGCAACTAAGTACACTTCCAGCTTCCCAGTATGCAAATAACCCGGGTCTTTGTGGTGTACCATTGCCTGATTGCAAGAATGACAACAGCCAACCGACAACAAATCCAAGTGATGATGTTAGCAAAGGAGGCCACAAAACAGCAACTGCAACATGGGCAAATAGCATTGTCATGGGAATTCTCATCTCTGTTGCTTCTGtatgtattttaattgtgtGGGCAATTGCAATGCGTGCAAGGAGGAAGGAGGCTGAGGAGGTCAAGATGCTTAATAGTTTGCAAGCATGCCATGCTGCTACAACATGGAAAATCGACAAAGAGAAAGAGCCCCTAAGCATCAATGTGGCAACATTTCAGAGGCAGCTGAGGAAGCTCAAGTTCTCACAGTTGATTGAAGCAACTAATGGCTTCTCAGCAGCAAGCCTTATTGGGTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTCAAAGACGGGTCAAGTGTTGCCATAAAGAAGCTCATTCGACTGAGCTGCCAGGGTGATCGAGAATTCATGGCAGAGATGGAAACCTTAGGGAAGATCAAGCACAGAAATCTTGTCCCGTTGTTGGGGTACTGCAAAGTAGGGGAAGAAAGGCTCCTTGTTTACGAATACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAATCAAGACACGTGATCGACGCATTTTAACatgggaagaaaggaaaaagattgCAAGAGGTGCTGCTAAAGGACTTTGCTTCCTGCACCACAATTGCATCCCACACATCATACACAGAGACATGAAATCAAGCAATGTGCTACTTGACCATGAAATGGAGTCCAGGGTCTCAGATTTCGGAATGGCAAGACTAATAAGTGCCCTTGACACACATCTTAGTGTGAGCACACTAGCAGGAACACCTGGATATGTTCCCCCAGAGTACTACCAAAGCTTCAGGTGCACTGCCAAGGGAGATGTCTACTCATTTGGGGTTGTAATGTTGGAACTGCTTAGCGGGAAACGCCCTACTGACAAGGAGGACTTTGGTGACACCAACTTGGTGGGGTGGGCCAAGATGAAGGTCCGCGAAGGGAAGCAAATGGAAGTAATTGACCCTGACTTGCTTTTGGCCACTCAAGGAACTGATGAAGCAGAAGCCAAAGAAGTGAAGGAGATGATAAGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCCATGCTGAGAGAGCTTATGGCTGGGTCAACTGATGGAAGCAGCAACAGTGCTTGA 3399 0.4287 MENNPIQLLPHLTVTLLMITVLFPVTEGAAVSSIKTDAQALLTFKSRIQKDPGGVLSGWNLNRNPCSWHGVSCTHGRVTQLDISGNNNLAGTISLDPLSSLDMLSVLKLSLNSFSVNSTSLLQLPYSLTQLDLSFGGVTGPVPENLFSKCPNLVVVNLSYNNLTGPIPENFFQNSDKLQALDLSSNNLTGSIFGLKMECFSLLQLDLSGNRLSDSIPLSLSNCTSLKSLNLANNMISGEIPKALGQLNKLQTLDLSHNQLTGWIPSELGNACASLLELKLSFNNISGSIPSGFSSCTWLQLLDISNNNMSGQLPDSIFQNLGSLQELRLGNNAITGQFPSSISSCKKLKIVDFSSNKIYGSIPRDLCPGAASLEELRMPDNLITGKIPAELSKCSQLKTLDFSLNYLNGTIPDELGQLENLEQLIAWFNGLEGRIPPKLGQCKNLKDLILNNNHLTGGIPIELFNCSNLEWISLTSNELSGEIPREFGLLTRLAVVQLGNNSLTGEIPAELANCSSLVWLDLNSNKLTGEIPPRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGKIPEEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKNDNSQPTTNPSDDVSKGGHKTATATWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDPDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMAGSTDGSSNSA 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2185 1132 MobiDBLite consensus disorder prediction 724 743 - -
Ssu5g2185 1132 Pfam Brassinosteroid receptor island domain 545 603 IPR045381 -
Ssu5g2185 1132 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Ssu5g2185 1132 ProSitePatterns Protein kinases ATP-binding region signature. 841 864 IPR017441 GO:0005524
Ssu5g2185 1132 SUPERFAMILY Protein kinase-like (PK-like) 816 1117 IPR011009 -
Ssu5g2185 1132 SMART LRR_typ_2 150 174 IPR003591 -
Ssu5g2185 1132 SMART LRR_typ_2 247 271 IPR003591 -
Ssu5g2185 1132 SMART LRR_typ_2 515 538 IPR003591 -
Ssu5g2185 1132 SMART LRR_typ_2 490 514 IPR003591 -
Ssu5g2185 1132 SMART LRR_typ_2 321 345 IPR003591 -
Ssu5g2185 1132 SMART LRR_typ_2 418 442 IPR003591 -
Ssu5g2185 1132 SMART LRR_typ_2 443 466 IPR003591 -
Ssu5g2185 1132 SMART LRR_typ_2 630 654 IPR003591 -
Ssu5g2185 1132 Gene3D Ribonuclease Inhibitor 36 147 IPR032675 -
Ssu5g2185 1132 PRINTS Leucine-rich repeat signature 247 260 - -
Ssu5g2185 1132 PRINTS Leucine-rich repeat signature 178 191 - -
Ssu5g2185 1132 ProSiteProfiles Leucine-rich repeat profile. 201 222 IPR001611 GO:0005515
Ssu5g2185 1132 Gene3D Transferase(Phosphotransferase) domain 1 911 1130 - -
Ssu5g2185 1132 Pfam Leucine rich repeat 127 188 IPR001611 GO:0005515
Ssu5g2185 1132 Pfam Leucine rich repeat 204 260 IPR001611 GO:0005515
Ssu5g2185 1132 Pfam Leucine rich repeat 299 358 IPR001611 GO:0005515
Ssu5g2185 1132 Pfam Leucine rich repeat 602 643 IPR001611 GO:0005515
Ssu5g2185 1132 Gene3D - 548 604 - -
Ssu5g2185 1132 SUPERFAMILY RNI-like 239 534 - -
Ssu5g2185 1132 SUPERFAMILY L domain-like 573 719 - -
Ssu5g2185 1132 CDD STKc_IRAK 841 1120 - -
Ssu5g2185 1132 Gene3D Phosphorylase Kinase; domain 1 795 910 - -
Ssu5g2185 1132 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 1121 - -
Ssu5g2185 1132 ProSiteProfiles Leucine-rich repeat profile. 249 270 IPR001611 GO:0005515
Ssu5g2185 1132 Gene3D Ribonuclease Inhibitor 149 723 IPR032675 -
Ssu5g2185 1132 Pfam Protein tyrosine and serine/threonine kinase 839 1116 IPR001245 GO:0004672|GO:0006468
Ssu5g2185 1132 MobiDBLite consensus disorder prediction 721 743 - -
Ssu5g2185 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 23 1121 - -
Ssu5g2185 1132 SMART serkin_6 835 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2185 1132 SUPERFAMILY L domain-like 59 315 - -
Ssu5g2185 1132 ProSiteProfiles Protein kinase domain profile. 835 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2185 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2185 Ssu-Chr5 62789353 62792751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2185 41 1129 Receptor kinase-like Gene Family AT1G55610 49.075 0.0 1012
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu5g2185 PK_Tyr_Ser-Thr 3.5e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2185 5 62789353 62792751 Ssu5g2185 5 62789353 62792751 ECH