Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2143 ATGCCGGTGGCGAGGCGAGAGACGTGCGATGCAAGAGTGATTGCTCACGTTGACATGGATTGCTTCTACGTTCAAGTGGAACAGAGAAAGCAACCAAATCTAAGAGGCTTGCCCACTGCAGTCATACAGTACAACTCCTTCAAAGGTGGTGCCCTCATTGCTGTTAGCTACGAGGCTCGCCGATGTGGCGTCAAACGtTCAATGCGGGGTGATGAAGCCAAGGAGGCATGCCCGCAAATTCAACTGGTCCAAGTGCCAGTGGCACGTGGCAAGGCCGATCTCAACTCGTATAGGAGTGCCGGTTCGGAGgTTGTTTCGGTTCTTTCGCAGAAGGGTCGTTGCGAGAGGGCTTCGATTGATGAGGTATATCTTGATCTAACTCATGCTGCTGAAGCCATGTTGATGGAAACTCCTCCAGAAAGCATGCAGGACTTTGAGGAGGAAGTTCTCAAGTCTCATGTTTTGGGGCTGGAAATTGAGGATGGAAGTGATGCCAAAGAAGAAGTTAGGAAGTGGCTTTGTAGGAGTGATGCTAGTTACCAGGATAAGCTATTAGCTTGTGGGGCTCTCATTGTTAGTGACCTGAGGATGCAGGTGCTTAAAGAGACAGAATTCACATGCTCTGCTGGTATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGCTATGAACAAACCTGCACAACAAACAGTTGTGCCACACTCATCTGTTGAAGGGTTGCTTGCGTCTTTGCcaataaagaaaatGAAACACCTTGGCGGAAAGCTGGGGAGTTCCTTACAGAGTGATCTTGGTGTCAACACCGTTGGTGATCTGCTTCAGTTTTCAGAGGAGAAGTTACAGCAGTGGTATGGGATCAATACTGGTACTTGGTTGTGGAATATTGCAAGAGGAATCAATGGGGAAGAAGTTGAGGGGCGACTACTTCCCAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACAATTGATTCTGTTCAACACTGGCTTAATAAACTGTGTGAAGAGCTGAACGAACGCCTTCACTCTGACCTGGATCAAAACAAACGGATTGCACAGACACTGACTCTTCATGCTAGAGCATATAAGACAGGGGATTCAGATTCACATAGAAAGTTCCCTTCTAAATCTTGTCCTTTAAGAtatgggactaaaaagattCAAGAGGATGCCCTAATTCTATTTCAAGCTGGGTTACGTGATTTTTTGGGCTTCTACAACTGTAAGGCTCATGGAAGTGAAAATAACAACTGGGGAATAACATCACTTGCTGTTTCTGCAAGCAAAATTGTGTCCATACCATCTGGGACACATTCAATTGTTAAATACTTTGGAGGGCAATTTCCATCCAGTTCTACATCACATCATTCAGTAGATGTTGTCATTGATGAAGCTGTGCCATCATCGCCTTCAGGTAGTGAAAATTGTTCGGGATTGGTTCCCTACGAATTACAGCTTGAATATCCTGAAGACACAGGAATGAAGCATTCAAAGGCTTGTTTGGATCAACAGGATCCGTTGTGCCATTTATCCAGTAAAGCAGATGGCTTGACTGAAGAATCCTCCCTCATGTCACCCCCAGgAAGCGAAGACAGAATGACTGCTCAAGGAGCCATGTAG 1638 0.453 MPVARRETCDARVIAHVDMDCFYVQVEQRKQPNLRGLPTAVIQYNSFKGGALIAVSYEARRCGVKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRSAGSEVVSVLSQKGRCERASIDEVYLDLTHAAEAMLMETPPESMQDFEEEVLKSHVLGLEIEDGSDAKEEVRKWLCRSDASYQDKLLACGALIVSDLRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPHSSVEGLLASLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGINGEEVEGRLLPKSHGSGKTFPGPQALKTIDSVQHWLNKLCEELNERLHSDLDQNKRIAQTLTLHARAYKTGDSDSHRKFPSKSCPLRYGTKKIQEDALILFQAGLRDFLGFYNCKAHGSENNNWGITSLAVSASKIVSIPSGTHSIVKYFGGQFPSSSTSHHSVDVVIDEAVPSSPSGSENCSGLVPYELQLEYPEDTGMKHSKACLDQQDPLCHLSSKADGLTEESSLMSPPGSEDRMTAQGAM 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2143 545 SUPERFAMILY DNA/RNA polymerases 10 305 IPR043502 -
Ssu5g2143 545 ProSiteProfiles UmuC domain profile. 14 254 IPR001126 GO:0006281
Ssu5g2143 545 Gene3D - 21 88 - -
Ssu5g2143 545 Gene3D - 89 233 IPR043128 -
Ssu5g2143 545 Gene3D - 247 303 - -
Ssu5g2143 545 PIRSF DNA_pol_eta 6 532 - -
Ssu5g2143 545 Pfam impB/mucB/samB family C-terminal domain 311 439 IPR017961 GO:0003684|GO:0006281
Ssu5g2143 545 MobiDBLite consensus disorder prediction 521 535 - -
Ssu5g2143 545 MobiDBLite consensus disorder prediction 521 545 - -
Ssu5g2143 545 PANTHER DNA POLYMERASE ETA 5 479 - -
Ssu5g2143 545 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 310 438 IPR036775 GO:0003684|GO:0006281
Ssu5g2143 545 PANTHER DNA POLYMERASE ETA 5 479 - -
Ssu5g2143 545 Gene3D - 305 438 IPR036775 GO:0003684|GO:0006281
Ssu5g2143 545 Pfam impB/mucB/samB family 17 222 IPR001126 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2143 Ssu-Chr5 61700520 61705472 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2143 5 61700520 61705472 Ssu5g2143 5 61700520 61705472 ECH