Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2133 ATGGGTGCGGCGGGTAGAGGGTTTGCTTGGTTATCCAAAGTGGTAGCGGTAGTAGCAATCACGGTGGTAGCGGGCGTGGGCTTCGCACAGGCCCAGCCCGAGGCCAGGTTCAAGTGCAGCGCGACCAACGCCACGTGTCGCGCTCTGATAAGCTACTCGAAGCCAAACGGCACGACGCTGGGCGACATCCAAAGCCTCTTCAACGTGAAGCACCTCCTGGACATCGTGGGCGCGAACAACCTTCCCAGCAACACCACAAAGAGCCACAAGGTGGGTCCCAACGAGGTTGTGAAGGTGCCGTTCCCGTGCGCGTGCAGCAACGGCACGGGGCTCTCGAACGGGGTTCCGCTCTACAAGATCAAAAAGGGGGACACGCTGTACGACATAGCGACCACCACCTTCGCGGGTTTGGTGAAGTACCCGCAGATCCAGGTGGCGAATAAGTTGCCGGACGCGAACAACATCACCACCGGGGATACGCTTTACATTCCCCTGCCGTGTAGCTGCGACGAGGTGGGTGGGATCAGTGTGGTGCACTATGCGCTCCTGGTCGCGGCAGGGAGCACCGTGGAGGGCATTGCTGAACAGTATGGCACCACCCAGCAGATACTCCTCACCCTTAATGGGATTGCCGACCCCAAATCCCTTCAAGCCGGTCAGGTTCTCGATGTTCCCCTCCGAGCTTGCTCCTCGAATGTGAAAAATGACTCATTGGACTTTCCGTTGCTTGTCGCAAATGCTACTTACGCCTATACTGCCAATGAATGCGTCAAATGCAAGTGCGACTCCAGTAACAGTTACATATTACAATGCGAGCCATCCCAACTGAAACCAACCAACTGGTCCGTTTGTCCCTCTAGGGAATGCTCAAGTAACGTCTTCATTGGCAACATCACCTCCTCTACAGATTCATGCAATCGCACGACCTGTGCCTATACCGGTTATAGCTCCCGCAATATCTCGGCCGAACTTGTAACAGAGAACACTTGTGCTGTGCCACCGAGTGGTTCAGGAGGATCTACTGGTTCAGATTCAGAAGCGAGGAGCACCTTGCAAGGCTTGCTTTCAAATAATCTTTTCATTGTCAGTCACTTCGTGCTCTTTCTTGTCTACGTTTTGTAG 1122 0.5463 MGAAGRGFAWLSKVVAVVAITVVAGVGFAQAQPEARFKCSATNATCRALISYSKPNGTTLGDIQSLFNVKHLLDIVGANNLPSNTTKSHKVGPNEVVKVPFPCACSNGTGLSNGVPLYKIKKGDTLYDIATTTFAGLVKYPQIQVANKLPDANNITTGDTLYIPLPCSCDEVGGISVVHYALLVAAGSTVEGIAEQYGTTQQILLTLNGIADPKSLQAGQVLDVPLRACSSNVKNDSLDFPLLVANATYAYTANECVKCKCDSSNSYILQCEPSQLKPTNWSVCPSRECSSNVFIGNITSSTDSCNRTTCAYTGYSSRNISAELVTENTCAVPPSGSGGSTGSDSEARSTLQGLLSNNLFIVSHFVLFLVYVL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2133 373 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 31 330 - -
Ssu5g2133 373 SMART LysM_2 117 164 IPR018392 -
Ssu5g2133 373 SMART LysM_2 181 225 IPR018392 -
Ssu5g2133 373 Pfam LysM domain 184 225 IPR018392 -
Ssu5g2133 373 Pfam LysM domain 118 164 IPR018392 -
Ssu5g2133 373 SUPERFAMILY LysM domain 183 225 IPR036779 -
Ssu5g2133 373 Gene3D LysM domain 176 238 IPR036779 -
Ssu5g2133 373 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 31 330 - -
Ssu5g2133 373 CDD LysM 184 224 IPR018392 -
Ssu5g2133 373 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Ssu5g2133 373 SUPERFAMILY LysM domain 117 165 IPR036779 -
Ssu5g2133 373 CDD LysM 118 163 IPR018392 -
Ssu5g2133 373 Gene3D LysM domain 117 171 IPR036779 -
Ssu5g2133 373 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2133 Ssu-Chr5 61619419 61621934 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2133 31 320 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 48.288 1.96e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2133 - - gmx:100804190 580.096