Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2128 ATGGGTGCGGCGGGTAGAGGCCCAGCCCGAGGCCAGGTTCAAGTGCAGCGCGACCAACGCCACGTGTCGCGCTCTGATAAGCTACTCGAAGCCAAACGGCACGACGCTGGGCGACATCCAAAGCCTCTTCAACGTGAAGCACCTCCTGGACATCGTGGGCGCGAACAACCTCCCAGCAACACCACAAAGAGCCACAAGGTGGGTCCCAACGAGGTTGTGAAGGTGCCGTTCCCGTGCGCGTGCAGCAACGGCACGGGGCTCTCGAACGGGGTTCCGCTCTACAAGATCAAAAAGGGGGACACGCTGTACGACATAGCGACCACCACCTTCGCGGGTTTGGTGAAGTACCCGCAGATCCAGGTGGCGAATAAGTTGCCGGACGCGAACAACATAACACCGGGATACGCTTACATTCCCCTGCCGTGTAGCTGCGACGAGGTGGGTGGGATCAGTGTGGTGCACTATGCGCTCCTGGTCGCGGCAGGGAGCACCGTGGAGGGCATTGCTGACAGTATGGCACCACCCAGCAGATACTCCTCACCCTAA 546 0.6062 MGAAGRGPARGQVQVQRDQRHVSRSDKLLEAKRHDAGRHPKPLQREAPPGHRGREQPPSNTTKSHKVGPNEVVKVPFPCACSNGTGLSNGVPLYKIKKGDTLYDIATTTFAGLVKYPQIQVANKLPDANNITPGYAYIPLPCSCDEVGGISVVHYALLVAAGSTVEGIADSMAPPSRYSSP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2128 181 ProSiteProfiles LysM domain profile. 92 139 IPR018392 -
Ssu5g2128 181 MobiDBLite consensus disorder prediction 17 52 - -
Ssu5g2128 181 Pfam LysM domain 94 134 IPR018392 -
Ssu5g2128 181 MobiDBLite consensus disorder prediction 1 69 - -
Ssu5g2128 181 Gene3D LysM domain 94 135 IPR036779 -
Ssu5g2128 181 PANTHER BNAC03G47500D PROTEIN 58 171 - -
Ssu5g2128 181 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 58 171 - -
Ssu5g2128 181 CDD LysM 94 134 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2128 Ssu-Chr5 61540928 61541544 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2128 53 169 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.847 6.42e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2128 - - gmx:100804190 179.489