Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2122 ATGGGCATTCTGAGGGGGCTTAATGGAGTGAAAAGAGCGGTGGTGGCTTTGGCTACTTCGTTGGGTGAGGTTGAGTATGATCCCAGTGTGATCAGCAAGGATGATATTGTGGCTGCGATTGAAGACGCTGGTTTCGAGGGTTCGTTTGTGCAGAGTAATGGGCAGGACCAGATTGTGTTGAGGGTTGGCGGTGTGTACTCTTTGGGTGATGCTCGGGTTTTGGAAGCGATGCTGAGTGGCATCAAAGGGGTGAAGCAGTTTCGGTTTGACTCGGTGTTGAACGAGCTTGATGTGGTTTTTGACCCCCAAGTTATCAGTTCGAGGTCATTGGTTGATAGGATCGAATTGGGAAGTAATGGCAAGTTTAAATTGCATGTTAGAAATCCTTACGCTAGAATGGCTTCTAAAGATGGTTTAGAGACTTCCCCTATGTTTCGGCTTTTTATTTCCAGCCTGTTTCTCAGTGTGAGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGAAGTGCCTTGCCAAGGGAAAGAACTCTGATGCCATTAAGAAGCCAGTGGAACTTACTCCTGCCACAGCTTTATTGATTGTCAAAGATAAAGgTGGTAGAACTATTGAAGAAAGGGAAATAGATTCCTTGCTTGTTCAACCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGCGCATTTCAGAAGTGTACAAAAGGAGGGGAAAGAGGAATGATGAGAAGAGACCAGAAGATAAAAATGGGCTTTGGAAATCAAGACCTGAAGGTTTATGAAAAGAGGAGGAGACAGGTAGCATCTGAACTGGaggagggagaggagagagagagagacataaCAGAATGGATGCATGGCAATCTAGGAGAGGAGGGAGGGGATACGGTACATCTTGTAAGGAGCAGTGCTCCATTCcatctttatttttcagttGCAGTAGTGTTGGGTCTGGTTCTTGTAGAGGAAACCTTCCTCTGTTTCACTGATTATTCAGAAATAAAAAGTCAGTTTCAGGTTTCATTGTTCTATCCTAACAGTGTCCTTCACATTGAAGCTACCAAAGTAGGATCTGATACAATTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTATATAGTGGGGCTCTTGTACCCATAAGAATGGCTGCCGGAAAATGGAAACCACTTTGTTTTTGCCCTTATGTTTTCAATATCTGTCGTGGTGATTGCATGTCCCTGTGCACTTCGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCCAAAAATGGCGTGTTAATTAA 1383 0.423 MGILRGLNGVKRAVVALATSLGEVEYDPSVISKDDIVAAIEDAGFEGSFVQSNGQDQIVLRVGGVYSLGDARVLEAMLSGIKGVKQFRFDSVLNELDVVFDPQVISSRSLVDRIELGSNGKFKLHVRNPYARMASKDGLETSPMFRLFISSLFLSVRFWSPTYFETSAMLITFVLLGKYLKCLAKGKNSDAIKKPVELTPATALLIVKDKGGRTIEEREIDSLLVQPGDTLKVLPGTKIPADGAFQKCTKGGERGMMRRDQKIKMGFGNQDLKVYEKRRRQVASELEEGEERERDITEWMHGNLGEEGGDTVHLVRSSAPFHLYFSVAVVLGLVLVEETFLCFTDYSEIKSQFQVSLFYPNSVLHIEATKVGSDTILSQIISLVETAQMSKAPIQKFADYVYSGALVPIRMAAGKWKPLCFCPYVFNICRGDCMSLCTSFGNTNCCHGGNRGWGQKWRVN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2122 460 Gene3D - 2 49 - -
Ssu5g2122 460 PANTHER HEAVY METAL P-TYPE ATPASE 362 413 - -
Ssu5g2122 460 CDD HMA 4 46 IPR006121 GO:0046872
Ssu5g2122 460 Gene3D - 185 253 - -
Ssu5g2122 460 PANTHER HEAVY METAL P-TYPE ATPASE 2 156 - -
Ssu5g2122 460 PANTHER ATP7, ISOFORM B 362 413 - -
Ssu5g2122 460 PANTHER ATP7, ISOFORM B 2 156 - -
Ssu5g2122 460 Coils Coil 272 292 - -
Ssu5g2122 460 PANTHER ATP7, ISOFORM B 158 245 - -
Ssu5g2122 460 ProSiteProfiles Heavy-metal-associated domain profile. 57 115 IPR006121 GO:0046872
Ssu5g2122 460 ProSiteProfiles Heavy-metal-associated domain profile. 1 49 IPR006121 GO:0046872
Ssu5g2122 460 PANTHER HEAVY METAL P-TYPE ATPASE 158 245 - -
Ssu5g2122 460 SUPERFAMILY HMA, heavy metal-associated domain 52 115 IPR036163 GO:0046872
Ssu5g2122 460 SUPERFAMILY HMA, heavy metal-associated domain 3 53 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2122 Ssu-Chr5 61417935 61421956 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2122 5 61417935 61421956 Ssu5g2122 5 61417935 61421956 ECH