Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2115 ATGAAGGGCAGTGTCAGTGAGGCATCATCAGGAGGAGACATGAATGTGAAACCTGCATGGCTTGAGAGGCTGATGGCTGAGACATTCTTTGGTGGTTGTGGGGTCCACCAGAATCAGAGGAAGAACGAGAAGAACATATTTTGCTTGCACTGTTGCCTTAGCATCTGCCCCCACTGCCTCCCTTCTCACCGCTCCCATCCCCTCCTCCAGGTGAGAAGGTATGTTTACCACGACGTGGTTCGATTGGGTGACTTGGAAAAGCTCATCGATTGTTCCAATATTCAGCCATATACCATTAACGGTGCCAAAGTGATATTCTTAAATCAGAGGCCACAGTCAAGGTCATGCAAAGGCACTGCCAATGCTTGCTGCACTTGTGACAGGATTCTTCAGGACCCCTTTCACTTCTGTTCTCTGTCATGCAAGGTTGATCACATGGTATGCGAGGGGGAAGGCTTGTCAAGCATTATTGAATCTGATTTTACATTTTTGCAGTTCGAGGGTCTAAGAGTTGATTGCTATACCCAATTTGTCCCCACTTCCTCCTGCTCGAATACTGAGGCTACCAGCAGTATTGCCAACAACACCACCAACAATAATGGCTTCTTCCTCTCTCTTGGAAGCAGGAGAAAGGGGGCTCCCCATAGAGCTCCTCTCTCCTAG 663 0.4842 MKGSVSEASSGGDMNVKPAWLERLMAETFFGGCGVHQNQRKNEKNIFCLHCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCSNIQPYTINGAKVIFLNQRPQSRSCKGTANACCTCDRILQDPFHFCSLSCKVDHMVCEGEGLSSIIESDFTFLQFEGLRVDCYTQFVPTSSCSNTEATSSIANNTTNNNGFFLSLGSRRKGAPHRAPLS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2115 220 Pfam PLATZ transcription factor 72 143 IPR006734 -
Ssu5g2115 220 PANTHER - 18 220 - -
Ssu5g2115 220 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 18 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2115 Ssu-Chr5 61345056 61349590 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu5g2115 PLATZ 9.7e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2115 5 61345056 61349590 Ssu5g2115 5 61345056 61349590 ECH