Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1738 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAGGCTCAAAACTTGGAGCTACCAAAGCCTAATCTGATGAGGAAACAACAGCAGCAACAAACTCAGCCCTCAGAGTCTTTGAAGTGCCCAAGATGTGACTCTACCAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCCTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGCAATGTTCCAGTTGGTGGTGGCAGGAAGAACAAGAGGGTCAAAAAAACAATCACTCCAACAACATCTTCCACCACTACTACCATCCCAGCAACCACCACTTCTACTTGCACTGCCACTGTCACCACCTCGATTGGCAACATGGATGGTATGTTGGGTAGCCACATGACAATTCAAACTCCTCTTGCAGATGATCAGAAAAACATGGCTTCCTCTCTCTATCAAGCTCTAATTCGTCCTCCACCTTTGCTGCTACAACAGAATCTGATGAACACAAGAGACTTTGAAGGCAAAGATTTTGGTATTGGTATTGGTATTGGTAATGGTATCTTTCCCACTTCAACTTTGCCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACTTCAAGCAGCCCTTTTGACACAAACCCTTGTTCAGTGTCAACCTCTCTGAGATCATCCAATGTTTATAACTATGGGGAGAAGTTTAAAGAAATGGAGGAACCAACCATAAATAGCACTACAGTGCCTAGCACAGGTGGCACTAACACACAACCATGGGAGATACCAGCAACAAGTGGTGCTGGCTTGGGAACTTCAAACTATTGGAATTGGGAGGATTTTGATTCATTGGTCTCAACTGATCTAAAAGATCCCTGGGATGATTCTGATATCAAACCCTGA 933 0.4427 MGLSSKQVSSSGLDWKQTLLEAQNLELPKPNLMRKQQQQQTQPSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKTITPTTSSTTTTIPATTTSTCTATVTTSIGNMDGMLGSHMTIQTPLADDQKNMASSLYQALIRPPPLLLQQNLMNTRDFEGKDFGIGIGIGNGIFPTSTLPLPHQSQSLLFPFSTSSSPFDTNPCSVSTSLRSSNVYNYGEKFKEMEEPTINSTTVPSTGGTNTQPWEIPATSGAGLGTSNYWNWEDFDSLVSTDLKDPWDDSDIKP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1738 310 Pfam Dof domain, zinc finger 46 99 IPR003851 GO:0003677|GO:0006355
Ssu5g1738 310 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Ssu5g1738 310 MobiDBLite consensus disorder prediction 29 48 - -
Ssu5g1738 310 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 195 IPR045174 GO:0003700|GO:0006355
Ssu5g1738 310 MobiDBLite consensus disorder prediction 30 48 - -
Ssu5g1738 310 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Ssu5g1738 310 PANTHER OS06G0284500 PROTEIN 30 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1738 Ssu-Chr5 52049657 52050589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1738 33 112 C2C2-Dof Transcription Factor Family AT5G60850 65.432 4.30e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu5g1738 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1738 - - gmx:100818111 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1738 5 52049657 52050589 Ssu1g0398 1 9333498 9334358 PCT