Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1674 ATGGAACAAGGAGAAGGTAGAGAGAAGAATAGACAACAACCTCAGCGTGCAGCACAGCAACCGCCGCAGCATCAGAAATGTCCACGCTGCGATTCTATGAACACCAAGTTCTGCTATTTCAACAACTATAGCCTGTCACAGCCTCGTCACTTCTGCAAAACATGTAAAAGGTACTGGACACACGGTGGAACCTTCAGAAACATACCCGTTGGTGGCGGCTCCCGTAAAGGGAATCGTGCCAGAACAAATTCTTCATCTTCCAATTCACTCACACAACCACAGCCAAATTTGATGAGGCCTTCTCCACCCACTGTGGTTCAGTCAACTGGCCCCTATTACCaacttggtggtggtggtggtggcagtggaaGTGGGTATTTGTCTTCTCTTGCAACGCTTCATTCTCTGAACACATCACAGCCTTTCAATCAGTACCTGAAAGTTGGGGGTGATGTTACGGCTTCTTCTAATTCTCCTATTCTGTCTGGCTTCAACGCCGCTTCTCTTCCACCGCGATTCCATCACATGGGAAACAGAGATAATAGGGTGGAATCTCTGTATCCTGCACAACAAGGTTTGATTCCATCAAGCATGGGTAATGGCAGTGCTGCTTCTCACTCCGGTCAACGCCCACAAAGCTTGACCGGTAATGCTACAAACCATAGGGCTAGTTCTGATGCCGCTTTGTGGAGTGCTACTATCAACGCCACTTCCATCAGGGGTAACTCTGATCAGAACAATGTCAAAGGAGGTTCTTCTTCTTTGACCCCAAATCATTGGCTTCATCTCCCTAGGTATGGCCATCCTCAATGA 813 0.46 MEQGEGREKNRQQPQRAAQQPPQHQKCPRCDSMNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGGSRKGNRARTNSSSSNSLTQPQPNLMRPSPPTVVQSTGPYYQLGGGGGGSGSGYLSSLATLHSLNTSQPFNQYLKVGGDVTASSNSPILSGFNAASLPPRFHHMGNRDNRVESLYPAQQGLIPSSMGNGSAASHSGQRPQSLTGNATNHRASSDAALWSATINATSIRGNSDQNNVKGGSSSLTPNHWLHLPRYGHPQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1674 270 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Ssu5g1674 270 MobiDBLite consensus disorder prediction 66 108 - -
Ssu5g1674 270 MobiDBLite consensus disorder prediction 239 270 - -
Ssu5g1674 270 Pfam Dof domain, zinc finger 23 78 IPR003851 GO:0003677|GO:0006355
Ssu5g1674 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 269 IPR045174 GO:0003700|GO:0006355
Ssu5g1674 270 MobiDBLite consensus disorder prediction 192 222 - -
Ssu5g1674 270 MobiDBLite consensus disorder prediction 13 28 - -
Ssu5g1674 270 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Ssu5g1674 270 MobiDBLite consensus disorder prediction 77 108 - -
Ssu5g1674 270 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g1674 270 MobiDBLite consensus disorder prediction 239 259 - -
Ssu5g1674 270 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 14 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1674 Ssu-Chr5 51101102 51101914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1674 15 88 C2C2-Dof Transcription Factor Family AT1G51700 68.000 5.73e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu5g1674 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1674 - - gmx:100814555 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1674 5 51101102 51101914 Ssu1g0449 1 10336645 10337568 PCT