Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1673 ATGTTGGGCAACTGTGAGAAAATGGTAGTCACCCCTCCAACAGCGTCTAACAAATGGACACAGGCTCAGAATATAGATGATCACAAGGCCTCTATGGGGAGAGTCATGGAAAAACCAAGCCAAGATCTTCTTCAGCAGCAGCAACAATCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGCTTGTCACAGCCCAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACTAGAGGTGGAACTCTGAGAAACGTTCCCGTTGGTGGCGGTTGCAGAAAAAACAAGCGTGTCAAGCGTCCAAACGGTGACGCTTCTGCTAGTGCTAATTCTCCTCCTTCTTCCTCCACTCCCAGCGCCAATTCAAACCCTCCTTCACAGCCCCACATCGATAATATCGCTTCTAGTTCCACCCCAAACCATGTCAATATCAATCCTTTGTTTTATGGTCTACCCGGTAACGGTAACGGTAACGGTAGCTCTCGTGATGTCATGAATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGCTGAATGCCCTTGGGTTAGGTTTTTCATCTGGGTTTAACGTTATGTCAAGTGAGGCTTGTGATAACGGTTACCGGAACGGGTTTAGtacttcaaataataataactcgtTTCTTTCTGCTTACAATTCCATCTTTGGTTCTTCTTCCTCAACTTGCGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCTACTCTTCTGCAAGAGAAATTTATCAGTGGTGGGGTGAAGGGTGATCAAGGTAGCAACAGTTTCCAGGGCTTGGCGCAGCTGGAAAGGTTGCAAATGGAAGGGAATGGCTCAAAAGGAGTGAAAGTTGAAGGACAAAGCAGGTTGGAGTggaataatgataataatggtggtggtggtggtggtgcttgTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACGCAGCAACGGGTTTGGGTGCTTGGAGTGATCAACCTAACATGGGTCCTTCAGTCACTTCTCTGATCTAG 1062 0.4482 MLGNCEKMVVTPPTASNKWTQAQNIDDHKASMGRVMEKPSQDLLQQQQQSLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNGDASASANSPPSSSTPSANSNPPSQPHIDNIASSSTPNHVNINPLFYGLPGNGNGNGSSRDVMNVPFPRFNLQSQLNALGLGFSSGFNVMSSEACDNGYRNGFSTSNNNNSFLSAYNSIFGSSSSTCAPSTPVMASLLSSTLLQEKFISGGVKGDQGSNSFQGLAQLERLQMEGNGSKGVKVEGQSRLEWNNDNNGGGGGGACQNQMEHVGLSDPNSLYWNAATGLGAWSDQPNMGPSVTSLI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1673 353 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Ssu5g1673 353 MobiDBLite consensus disorder prediction 112 145 - -
Ssu5g1673 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 2 339 - -
Ssu5g1673 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 339 IPR045174 GO:0003700|GO:0006355
Ssu5g1673 353 MobiDBLite consensus disorder prediction 95 145 - -
Ssu5g1673 353 Pfam Dof domain, zinc finger 49 105 IPR003851 GO:0003677|GO:0006355
Ssu5g1673 353 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1673 Ssu-Chr5 51093171 51094416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1673 1 353 C2C2-Dof Transcription Factor Family AT1G28310 38.503 8.33e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu5g1673 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1673 - - gmx:778105 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1673 5 51093171 51094416 Ssu1g0451 1 10388984 10392619 PCT