Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1318 ATGTCAGAGGTTAAAGACCCAGCGATAAAGCTGTTTGGAAGGACAATTTCGCTGCCACGCATCCCCAGTGATTCTTCTGAACCTGCGCGTGCCACCTCCTCTTCTTCGCGTGAAGTTAGTTCTTCTACCCAACACGAAGCTGAGGAACCATCAAGGAAAGAACTTACCTCAGTTCAAGATGATGATGCCTCACATCAAACCACAGAGGATTTAAAATCTCCCACAACTTCTTCAGGCATATTCGAGAATCCTAAGACTCCCTCAGCTGAAACCGAGACATCAATACTGAAATCCTCCACAAATGGAGAACAAAGTGAGACAAGTGCTTCTGAAGAAAAAACACCAAAGAAACCTGACAAGGTACTTCCATGCCCCAGATGCAATAGCATGGACACCAAATTCTGTTACTACAACAATTACAACGTCAATCAGCCTCGTCATTTCTGCAAGAACTGTCAAAGGTACTGGACTGCAGGAGGAACAATGAGGAATGTGCCGGTAGGTGCCGGTCGCCGAAAGAACAAGAACTCTTCGGCGACTGCGTCACATTACCGGCACATAATGGTCCCAGAGACACTCCAGGGAGCTACACTCAATGGCCCCAATGTATTGCACAATGCTGTTTTGGGAAATGGAGCAGCTGTCTTGACTTTTGGTCCTGATTCCCCCCTTTGTGATACAATGGCTTCTGTGTTGAACATTGCTGAGAGAGCACAAAGTTGTGTTCCAAATGGGTTTCATGCAACTGAGCCAAATACTTTTGTTTCATATAGTAAGGAGGATGATGGGGGTGGTCACTCTACTTCAACTTCATCAGAGAGGAGAAGCAATACTGGCTCACATGAATCAGTGGATAAAAGGGTAGAAAGTTTCGCTCCTCAATTGCCATACTTCCCAAGTTCCCCTTGGCCTTATCCATGGAACTCTACAATGCCTTCTACATTTTGCCCACCAGGCTACCCTTTATCATTCTATACCACACCAGCATATTGGGGTTGTATGCCACCCTCTTGGAATATATCATGTATCTCACCCCAATCTTCTGTTAACAACTCTGTCTCTGCCCCTACTTTGGGGAAACACTCAAGGGATGGGAACATCATTGCCCCATCCAATTCACAGAAAGAGATGCATGATATAGAGCACAACTGCTCAGAACACAATGTCTTGATCCCCAAGACTCTTAGAATTGATGACCCTAGTGAAGCTGCAAAGAGTTCCATGTGGTCAAAACTAGGGATCAAGAATGATAAGGCCAGTTCTGGAGGCCTTTTCAAGGCATTTCCATCCAAGGGAAATGACATGAATCACATGGATGAAGCATCACCAGTATTGCAAGCCAACCCTGCAGCTTTATCGCGGTCTCTTACCTTCCGTGAACAGACCTAA 1389 0.4564 MSEVKDPAIKLFGRTISLPRIPSDSSEPARATSSSSREVSSSTQHEAEEPSRKELTSVQDDDASHQTTEDLKSPTTSSGIFENPKTPSAETETSILKSSTNGEQSETSASEEKTPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSATASHYRHIMVPETLQGATLNGPNVLHNAVLGNGAAVLTFGPDSPLCDTMASVLNIAERAQSCVPNGFHATEPNTFVSYSKEDDGGGHSTSTSSERRSNTGSHESVDKRVESFAPQLPYFPSSPWPYPWNSTMPSTFCPPGYPLSFYTTPAYWGCMPPSWNISCISPQSSVNNSVSAPTLGKHSRDGNIIAPSNSQKEMHDIEHNCSEHNVLIPKTLRIDDPSEAAKSSMWSKLGIKNDKASSGGLFKAFPSKGNDMNHMDEASPVLQANPAALSRSLTFREQT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1318 462 Pfam Dof domain, zinc finger 119 176 IPR003851 GO:0003677|GO:0006355
Ssu5g1318 462 MobiDBLite consensus disorder prediction 69 108 - -
Ssu5g1318 462 MobiDBLite consensus disorder prediction 1 121 - -
Ssu5g1318 462 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 462 - -
Ssu5g1318 462 PANTHER CYCLIC DOF FACTOR 2 1 462 IPR045174 GO:0003700|GO:0006355
Ssu5g1318 462 MobiDBLite consensus disorder prediction 42 68 - -
Ssu5g1318 462 MobiDBLite consensus disorder prediction 253 285 - -
Ssu5g1318 462 MobiDBLite consensus disorder prediction 253 277 - -
Ssu5g1318 462 ProSiteProfiles Zinc finger Dof-type profile. 122 176 IPR003851 GO:0003677|GO:0006355
Ssu5g1318 462 MobiDBLite consensus disorder prediction 431 462 - -
Ssu5g1318 462 MobiDBLite consensus disorder prediction 19 41 - -
Ssu5g1318 462 MobiDBLite consensus disorder prediction 448 462 - -
Ssu5g1318 462 ProSitePatterns Zinc finger Dof-type signature. 124 160 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1318 Ssu-Chr5 43336956 43339835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1318 4 460 C2C2-Dof Transcription Factor Family AT5G39660 39.721 5.86e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu5g1318 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1318 - - gmx:100813315 752.666