Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1171 ATGGTGCCGCCAGATGACATGCCAGCAACACCCAAAGACCAAGAGACTCAAACTCAAGGCCGAAAAACCACCTCAACAACGAGGCCAGCACCAGAGCAAAGCATAAAGTGCCCCAGATGCGACTCACCCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCCAGGCACTTCTGCAAAACGTGCCGAAGGTACTGGACCAACGGTGGAGCCCTGCGCAACGTCCCAATAGGAGGCGGTTGCAGGAAGAACAAAAAGGTCaaatcctcttcctcttcttcatcatcatcatcattgtccAGACTCTCGTGTGACTCCAAGGACTTTCAATTTCACGGTCTTTCCGTTCCACCCTCCGTTGAATTTCACCTCGGTGGGTTACCCTTCCCCTCGAGCCTCCACAACCACCCTCCAACACCAATCCCTGGGGTGTTTAACCAGTTCTCTTCTTTTGGGGACGTTTCAGCCACAAATAATGTTTTATCTGGCTTCCAACTTGACCCACCTCCTTCCTCAAATTCTTTGATGGGTCTTGTTCCACCCAGCGCCGAGCTCTGGTCGCTCGGTGGGTCCCAAAGCTCGACACTGTCTGATCCATTGAACGGTGCAATGCAGTCTATGAACGTTCACAGCAGCCTCGCTTCTTCAATTGAGTCATTGAGCAACATCAACCAGGACTTGCACCTGAAGCTGCAGCAGCAGCGTTTGGCAATGATGTTCGGTGGGGACAGCCAGAAAGGTGACAACGGCGTTTCGCTTTCACAACCGGTTAATGGCTTTGATAACCAGAAGTTGTTGCAACCTGTTTTGTTTCAGAACCTTGAGATTTCGAAGCCAGAAGAGAGCTTGCCACCTGGCAGTTCCGTAAAAGAAGGCCCAACTGCGGACACAGTAACGTCCACCGAATGGTTCTTTGGGAATTCTTATTCCTCTGTGACTCCTGCAACAACTCCGAGCAATGGCGGCAATGCTAACGAGAATGATGCGAACAACAACTGGAGTGGTGCCCTTGCTTGGGGGGATTTGCAGCAGCAACCATACAGTGCTTTGCCCTAG 1065 0.4977 MVPPDDMPATPKDQETQTQGRKTTSTTRPAPEQSIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKSSSSSSSSSSLSRLSCDSKDFQFHGLSVPPSVEFHLGGLPFPSSLHNHPPTPIPGVFNQFSSFGDVSATNNVLSGFQLDPPPSSNSLMGLVPPSAELWSLGGSQSSTLSDPLNGAMQSMNVHSSLASSIESLSNINQDLHLKLQQQRLAMMFGGDSQKGDNGVSLSQPVNGFDNQKLLQPVLFQNLEISKPEESLPPGSSVKEGPTADTVTSTEWFFGNSYSSVTPATTPSNGGNANENDANNNWSGALAWGDLQQQPYSALP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1171 354 MobiDBLite consensus disorder prediction 88 103 - -
Ssu5g1171 354 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Ssu5g1171 354 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 354 IPR045174 GO:0003700|GO:0006355
Ssu5g1171 354 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Ssu5g1171 354 MobiDBLite consensus disorder prediction 1 37 - -
Ssu5g1171 354 MobiDBLite consensus disorder prediction 11 32 - -
Ssu5g1171 354 MobiDBLite consensus disorder prediction 80 103 - -
Ssu5g1171 354 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Ssu5g1171 354 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 18 354 - -
Ssu5g1171 354 MobiDBLite consensus disorder prediction 312 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1171 Ssu-Chr5 37963789 37964853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1171 18 354 C2C2-Dof Transcription Factor Family AT5G65590 37.572 7.05e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu5g1171 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1171 - - gmx:102663483 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1896 2 70729731 70730738 Ssu5g1171 5 37963789 37964853 PCT