Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0333 ATGGCACCCAAAAACCCCGAAGACCCGACACTTGCCAAACTTGAGTCAGCATGTTCCGACTTGAAAACCCTCCTTCGAGCCTCAGAGGAAACGGAAGAGAATCTGGGAGAGACGGAGACGAGGTTCGATCTCTTACAAGGATCACTGTCGAAAGCATCCAGAAGAATGGTTCCTTTACAATCCTTAGCCATGTCGAGGAAGGCACTTGACACCAGAATCACCAGAGCAATTTCCCCCGCGCTCGCACTCCTCAACACGTTCAAACGCACGGAGTCTCTCCAAAACAACCTCGTCGACATCTCGTCGAAGCTGTCAGCGAAGAAGCCGCATCAGAAGCGGCTTGAGAAGCTTCGGGAATACGTGGAGTGCGTGGGCGAGCTGAACGAGGGGATTAACAGCATAGGCGAAGAGGTTGAGGTGGTGATTCAGAAGCTGCAGGAGGTGGTGGAGTTTATAAGCCGAACGAAGGCGGCGGATCGGTACAGGAACGAGAGGCTGAGGGAGGCGCTGGCGACTCTGAAGGCGCTGTATGAGAGCGAGGTTGATGAGATGAGGTTCGAGGGGTTGCTGGACCGGGCTTTGGTTCATATGCAGGATGAGTTTGAGGGTCTGTTGCTGAGAATGAAGCACCGGAACCTGGGAGATTTGTTGCACCAACATGCTGACAGGGAATTGGGGTCGGACCTGGAAATTGAAGTCCTCACACGAATTTCAACCACTCTTGCCGCCAATGATTGCCTAGACATATGCATTGACATATACGTCAAGACGAGATACAGAAGGGCTGCGAAGGCACTAATGAAGCTAAACCCTGATTACCTGCGAACATACACCCCAGAAGGAATCGACGAAATGGAGTGGGAAACCCTAGAGACAGCCATAACCCTCTGGGTCCAACACTTGGAAGTCGCAGTAAAGAAGGTCCTCCTCTCAGAAAAAAAACTCTGCGAAAGAGTCTTGGGAGATTTCATGGAGGGACTAGTATGGCCAGAATGCTTCATCAAAATCTCCGACAAGATCATGGCCGTCTTCTTCCGCTTCGGCGAAGGCGTGGCCCGAAGCAGCAAAGAGCCTCAGAAGCTGTTCAAACTCTTAGACATGTTCGAATCCTTAGTAAAACTCAAACCGGAGATGTCACAAATCTTTGAAGGCGAACCCGGGGTAGACATATGCACCCGGTTCCGCGAGTTAGAGAAACTCATCATCGATGCTTCGAGCAAAGTCTTCTGGGAATTCGGCCTCCAAATAGAAGGCAACATCGACGGCCTTCCACCTCCTCAAGACGGTTCCGTTCCCAAACTCGTAAGATACGCTATCAACTATCTCAAGTACCTCACCACAGTTAATTACCGAGCATCCATGGTTAAGGTTCTCCAAACCGAACAAACATGGAAAGGTAGCAATGACGTGTCCTCCAAACACGAAACGGACGAGGGTTTATTGAAGCATGCAATTTCCAACGTCATGGAGGCGCTTCAGAGAAACATTGAGTCAAAACGTTTGTGTTGTAGGGACAAGGTTTTGGTGCACGTGTTCACGATGAACACTTATTGGTACATTTACATGAGGACAAAGAACACGGAGCTTGGTGAGGTGTTGGGTGAGCAATACATGAAGAAAGGTTATAAGGCCGTGGCGGAGGAATCTGCTTACTTGTATCAGAAGCAAGCGTGGGGGGGTTTGGTGAGGGTTTTGGATGGTGAGGATGTGAGGGAGGAAGGGAAGGGGAGTGTTGGAAGGGTGGTGAGTGAGAAGATTGAGACGTTTTTCAAGGGTTTGAATGAGGTTTGTGAGAGGCACAGAGGGGTGTACAGTATACCGGACGTTGATTTGAGGGAGCAAATGAGGGAAGCGACGGTGAGGCTTGTGGTGCCGGCTTATGCGGAGTTTTTGGAGGCTTATTCGGGGTTGATGCAGAGGAAAGGGTTTCCGAGTGTTGAGAGGGTGAAGGGATTGGTGGGGAAGGCTTTTGATGGGAAGGTGATGAAGAGATGGGGATCTGCTTCTAGTGATTGGAATGCTGCAAGGAACTCTGCGTCTCTGGAGGGGGATGTTAGATCAGGCAATGGTGGCGATGTTTGA 2082 0.5038 MAPKNPEDPTLAKLESACSDLKTLLRASEETEENLGETETRFDLLQGSLSKASRRMVPLQSLAMSRKALDTRITRAISPALALLNTFKRTESLQNNLVDISSKLSAKKPHQKRLEKLREYVECVGELNEGINSIGEEVEVVIQKLQEVVEFISRTKAADRYRNERLREALATLKALYESEVDEMRFEGLLDRALVHMQDEFEGLLLRMKHRNLGDLLHQHADRELGSDLEIEVLTRISTTLAANDCLDICIDIYVKTRYRRAAKALMKLNPDYLRTYTPEGIDEMEWETLETAITLWVQHLEVAVKKVLLSEKKLCERVLGDFMEGLVWPECFIKISDKIMAVFFRFGEGVARSSKEPQKLFKLLDMFESLVKLKPEMSQIFEGEPGVDICTRFRELEKLIIDASSKVFWEFGLQIEGNIDGLPPPQDGSVPKLVRYAINYLKYLTTVNYRASMVKVLQTEQTWKGSNDVSSKHETDEGLLKHAISNVMEALQRNIESKRLCCRDKVLVHVFTMNTYWYIYMRTKNTELGEVLGEQYMKKGYKAVAEESAYLYQKQAWGGLVRVLDGEDVREEGKGSVGRVVSEKIETFFKGLNEVCERHRGVYSIPDVDLREQMREATVRLVVPAYAEFLEAYSGLMQRKGFPSVERVKGLVGKAFDGKVMKRWGSASSDWNAARNSASLEGDVRSGNGGDV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0333 693 Coils Coil 11 41 - -
Ssu5g0333 693 Gene3D Exocyst complex component Exo70 142 664 - -
Ssu5g0333 693 SUPERFAMILY Cullin repeat-like 164 639 IPR016159 -
Ssu5g0333 693 PANTHER OS08G0519900 PROTEIN 8 659 - -
Ssu5g0333 693 PANTHER EXOCYST COMPLEX PROTEIN EXO70 8 659 IPR004140 GO:0000145|GO:0006887
Ssu5g0333 693 Coils Coil 163 183 - -
Ssu5g0333 693 Pfam Exo70 exocyst complex subunit 297 638 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0333 Ssu-Chr5 6991080 6994199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0333 1 640 EXO70 exocyst subunit family AT4G31540 29.003 1.93e-77 260
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0333 5 6991080 6994199 Ssu5g0333 5 6991080 6994199 ECH