Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0327 ATGATGGCTGGCAGCTCAAGAAGGGGTTGGCAGCTGTTAGCACTCATAGTATCAGCACAGCAGTGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGCAGGAGGGATAGATCAGTTAGAATTACTAAGACTAAAAGCTGTACTTCAAATTACTCAGCAGCAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCAGTAATTGAAGGCAAAAAAGAGCATTGGCTTCAAGCTAAGACATTCAGGCATGAGGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCATAGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAAGCCCAGATGATAGAATTTTTTTCTCCCAGAAGTTGGCATATTACAGCACCATGCATTAACAAATCACCAATCTGCAATTACCTGGCTGTGACAATGACAGGGTTGTTGTTTGAAGCTCAATCATTACATAAGGAGGCCTTTGTTTCCTTCTCAGTCTCATTGTCAATAGAACCAGATTACATTCCCAGCATCATTTCAACTGCAAAATTGTTGCTTAAACTTGGCATGCAATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGAACCCACAAACCATGATGCGTGGTTTAACCTTGGATTGGTTTCAAAAATGGAAGGTTCAATACAACAAGCAGCAGATTGCTTTCAAGCCGCATGTGAGCTGAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTGA 780 0.4064 MMAGSSRRGWQLLALIVSAQQWFKDAETIVDFALDEAGGIDQLELLRLKAVLQITQQQPKQAIETYRILLAVIEGKKEHWLQAKTFRHEALTEQKLEMEAWQDLATIYADHSSFLDAKACVDKAQMIEFFSPRSWHITAPCINKSPICNYLAVTMTGLLFEAQSLHKEAFVSFSVSLSIEPDYIPSIISTAKLLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSIQQAADCFQAACELKLSAPVQKFE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0327 259 SUPERFAMILY TPR-like 43 250 IPR011990 GO:0005515
Ssu5g0327 259 PANTHER PROTEIN NPG1 1 258 IPR043376 -
Ssu5g0327 259 Gene3D Tetratricopeptide repeat domain 4 255 IPR011990 GO:0005515
Ssu5g0327 259 SUPERFAMILY TPR-like 8 125 IPR011990 GO:0005515
Ssu5g0327 259 PANTHER PROTEIN NPGR1 1 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0327 Ssu-Chr5 6938777 6939973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0327 1 258 Calmodulin-binding Proteins AT1G27460 49.612 1.93e-78 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0327 5 6938777 6939973 Ssu5g0327 5 6938777 6939973 ECH
Ssu5g0327 5 6938777 6939973 Ssu1g3700 1 93241561 93244967 PCT